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GrainGenes Marker Report: CDO345

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Locus
CDO345
Type
RFLP
Synonym
SynonymCDO345
Chromosome
3H
Map
Barley-ConsensusFHB-3H92.89
[ Show all 12 ]
[ Show Nearby Loci ]
Map Data
Barley, Abiotic QTL Consensus
[ Show all 12 ]
Probe
CDO345
Homology
A83370e-value: 2.1probable MFS transporter PA2210 [imported] - Pseudomonas aeruginosa (strain PAO1)
A83370e-value: 2.4probable MFS transporter PA2210 [imported] - Pseudomonas aeruginosa (strain PAO1)
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceWenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
ReferenceMesfin A et al. (2003) Quantitative trait loci for fusarium head blight resistance in barley detected in a two-rowed by six-rowed population Crop Science 43:307-318.
Data Source
Close, Timothy J.
Remark
Number of populations contributing to the placement of CDO345 in the Barley, Consensus 2006 DArT maps = 1
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex
Possible Orthologs
Xcdo345
Xcdo345d


Probe
CDO345
Locus
CDO345
Xcdo345
Xcdo345d
Reference
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks
Uni-ZAP XR library
Type
cDNA
Sequence
BE439084
[ Show all 8 ]
Source Species
Avena sativa
Source Germplasm
Brooks (oat)
Source Tissue
etiolated leaf
PCR size
1.5