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GrainGenes Marker Report: CDO113B

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Locus	CDO113B
Type	RFLP
Synonym	Synonym CDO113
Chromosome	3H
Map	Barley-Consensus2-3H 85.4 [ Show all 15 ]
	[ Show Nearby Loci ]
QTL with Locus Marker	QAa.StMo-3H QGpc.StMo-3H.1 QYld.StMo-3H.2
Map Data	Barley consensus 2 [ Show all 15 ]
Species	Hordeum vulgare
Probe	CDO113
Homology	P5CS_ORYSA e-value: 2e-07 DELTA 1-PYRROLINE-5-CARBOXYLATE SYNTHETASE (P5CS) [INCLUDES: GLUTAMATE 5-KINASE (GAMMA-GLUTAMYL KINASE) (GK); GAMMA-GLUTAMYL PHOSPHATE REDUCTASE (GPR) (GLUTAMATE-5-SEMIALDEHYDE DEHYDROGENASE) (GLUTAMYL-GAMMA-SEMIALDEHYDE DEHYDROGENASE)]
Reference	Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Rodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source	Blake, Tom 05.04.19 Close, Timothy J.
Remark	Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex Locus in 'Barley, Consensus 2007, SSR' was a BIN marker in 'Barley, Consensus 2006, Marcel'
Possible Orthologs	aCDO113 [ Show all 9 ]
Probe for Locus	CDO113
Locus	CDO113B [ Show all 8 ]
Synonym	Synonym HAR35_15808 HAR35_16190
Reference	Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
General Remarks	Uni-ZAP XR library OatUni-ZAPXR [c]
Type	cDNA
Sequence	BE439054 BE439101 CDO113_WHE2C0061 CDO113_WHE2C0062
Polymorphism	CDO113 DraI
Linkage Group	[b 7L] 3
Insert Enzyme	EcoRI XhoI
Source Species	Avena sativa
Source Germplasm	Brooks (oat)
Source Tissue	etiolated leaf
Insert Size	1.8
PCR size	1.8