Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: AM42

[Submit comment/correction]

Locus	am42
Type	Microsatellite
Synonym	Other name AM42
Map	Oat-KxO/2003-11_41+20 63.6
	[ Show Nearby Loci ]
Map Data	Oat, KxO, 2003
Probe	AM42
Remark	Marker placement value = 12.10 cM on map Oat-KxO/2003-11_41+20 Marker is not a framework marker on map Oat-KxO/2003-11_41+20
Probe	AM42
Locus	am42 AM42 am42a am42b
Reference	Fu YB et al. (2007) Microsatellite variation in Avena sterilis oat germplasm Theoretical and Applied Genetics 114:1029-1038. Li CD et al. (2000) The development of oat microsatellite markers and their use in identifying relationships among Avena species and oat cultivars Theoretical and Applied Genetics 101:1259-1268.
Remarks	Insert contains repeat (GAA)16 Polymorphic in Kanota/Ogle but not inMarion/Terra. Among 20 oat cultivars, 3 alleles were found, polymorphic information content (PIC) = 0.59. In 369 Avena sterilis accessions there were 6 alleles of size 188-201 bp, PIC = 0.4.
Type	Genomic PCR SSR
PCR primers	5'GCT TCC CGC AAA TCA TCA T 5'GAG TAA GCA AAG GCC AAA AAG T
SSR size	193
Amplification Conditions	Average melting temperature (degrees C) = 45
Source Species	Avena sativa
Source Germplasm	Ogle (oat)