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GrainGenes Marker Report: AM38

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Locus	AM38
Type	Microsatellite
Map	Oat-AxM-DH2008-19 116
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Map Data	Oat, AxM Doubled Haploid, 2008
Species	Avena sativa
Probe	AM38
Reference	Tanhuanpaa P et al. (2008) The first doubled haploid linkage map for cultivated oat. Genome 51:560-569.
Probe	AM38
Locus	AM38
Reference	Li CD et al. (2000) The development of oat microsatellite markers and their use in identifying relationships among Avena species and oat cultivars Theoretical and Applied Genetics 101:1259-1268.
Remarks	Insert contains repeat (GAA)9 Among 20 oat cultivars, 3 alleles were found, polymorphic information content (PIC) = 0.56.
Type	PCR SSR Microsatellite
PCR primers	5'TGA TGA CCT CTT GAG TAA GCA 5'TGC CTT TCG TGG ACT TAC TA
SSR size	178
Amplification Conditions	Average melting temperature (degrees C) = 45
Source Species	Avena sativa
Source Germplasm	Ogle (oat)