Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: AM31

[Submit comment/correction]

Locus	AM31
Type	Microsatellite
Map	Oat-AxM-DH2008-16 67
	[ Show Nearby Loci ]
Map Data	Oat, AxM Doubled Haploid, 2008
Species	Avena sativa
Probe	AM31
Reference	Tanhuanpaa P et al. (2008) The first doubled haploid linkage map for cultivated oat. Genome 51:560-569.
Probe	AM31
Locus	AM31
Reference	Li CD et al. (2000) The development of oat microsatellite markers and their use in identifying relationships among Avena species and oat cultivars Theoretical and Applied Genetics 101:1259-1268.
Remarks	Insert contains repeat (GAA)23 Among 20 oat cultivars, 3 alleles were found, polymorphic information content (PIC) = 0.51.
Type	PCR SSR Microsatellite
PCR primers	5'GCA AAG GCC ATA TGG TGA GAA 5'CAT AGG TTT GCC ATT CGT GGT
SSR size	186
Amplification Conditions	Average melting temperature (degrees C) = 47
Source Species	Avena sativa
Source Germplasm	Ogle (oat)