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GrainGenes Marker Report: ABG500b

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Locus
ABG500b
Type
RFLP
Synonym
SynonymABG500
Chromosome
4H
Map
Barley-Consensus2-4H94.5
[ Show all 16 ]
[ Show Nearby Loci ]
QTL with Locus Marker
QGpc.StMo-4H
QLg.StMo-4H
Map Data
Barley consensus 2
[ Show all 16 ]
Probe
ABG500
Reference
ReferenceWenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
ReferenceRodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
ReferenceLi JZ et al. (2003) Development and genetic mapping of 127 new microsatellite markers in barley Theoretical and Applied Genetics 107:1021-1027.
Data Source
Blake, Tom05.04.19
Remark
Number of populations contributing to the placement of ABG500B in the Barley, Consensus 2006 DArT maps = 1
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex,Igri x Franka
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex; Igri x Franka
Possible Orthologs
ABG500
ABG500A
ABG500a-1H
ABG500b-4H
Xabg500


Probe for Locus
ABG500
Locus
ABG500A
[ Show all 6 ]
Synonym
SynonymHAR35_26354
External Databases
DDBJ
EMBL
GenBank
Type
Genomic
STS
PCR primers
GCTAGAACTTGACCAATCTC
AAGAAGAACCCGGAGAATCT
STS primers
5' ATTAATCCGACCGTCACTGC
5' ACGAACTCCTCGCTGCC
STS size
189
Amplification Conditions
STS annealing temperature 58-60 oC
Sequence
AF309360
L44037
ABG500
ABG500-5
Source Species
Hordeum vulgare