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GrainGenes Marker Report: ABG4

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Locus
ABG4
Type
RFLP
Synonym
SynonymABG004
Chromosome
3H
Chromosome Arm
3HL
Map
Barley-consensus-2003-3H98.9
[ Show all 12 ]
[ Show Nearby Loci ]
QTL with Locus Marker
QHd.DiMo-3H
QS/T.DiMo-3H
Map Data
Barley consensus
[ Show all 14 ]
Species
Hordeum vulgare
Probe
ABG4
Reference
ReferenceWenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
ReferenceLi JZ et al. (2003) Development and genetic mapping of 127 new microsatellite markers in barley Theoretical and Applied Genetics 107:1021-1027.
ReferenceChoi DW et al. (2000) Map locations of barley Dhn genes determined by gene-specific PCR Theoretical and Applied Genetics 101:350-354.
Data Source
Langridge, Peter J.
Remark
Number of populations contributing to the placement of ABG4 in the Barley, Consensus 2006 DArT maps = 2
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex; Oregon Wolfe Dom x Rec; Igri x Franka
In the Bowman-BC x Calicuchima-sib maps, this locus was originally assigned to a second linkage group on 3H. The distance between ABG453 and ABG4 is an average of 31.2 in the 3 GrainGenes maps containing these loci, and the linkage groups were combined at a distance of 31.2 cM.
Possible Orthologs
ABG004
ABG004-3H
ABG4B
Xabg4
Xabg4-3


Probe
ABG4
Locus
ABG4B
[ Show all 10 ]
Remarks
Shin Ebisu16 gDNA
Type
Genomic
STS
PCR primers
AGC ACC AAA GCA CCT GAA CC
CGG GAG GAG GGG AAG AGG AC
STS primers
5' CTGCCACAAGGAATTTCCGG
5' AGCACCAAAGCACCTGAACCC
STS size
317
Amplification Conditions
STS annealing temperature 55-58 oC
Sequence
L43994
ABG4
ABG004-5
Linkage Group
Group 3
3
Source Species
Hordeum vulgare
Source Germplasm
Shin Ebisu 16
Insert Size
0.5