Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: ABC164b

[Submit comment/correction]

Locus	ABC164b
Type	RFLP
Chromosome	5H 6H
Map	Hordeum-Bins-6H 75 Hordeum-Consensus2006-DArT-5H 46.4 Hordeum-Graner2-6H 67.5 Hv-Consensus2006-Marcel-6H 63.49 Hv-Integrated2009-6H 61.8
	[ Show Nearby Loci ]
Map Data	Barley, BinMap 2005 Barley, Consensus 2006, DArT Barley, Consensus 2006, Marcel Barley, Integrated, Marcel 2009 Barley, IxF
Probe	ABC164
Reference	Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
Data Source	Kleinhofs, Andris
Remark	Number of populations contributing to the placement of ABC164b in the Barley, Consensus 2006 DArT maps = 1 This marker is a Binlocus in the Hordeum-Bins maps, i.e. a marker mapped in other crosses and located to the Steptoe x Morex bin Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Igri x Franka Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Igri x Franka
Possible Orthologs	ABC164 [ Show all 11 ]
Probe for Locus	ABC164
Locus	ABC164 [ Show all 17 ]
Synonym	Synonym HAR35_19975 HAR35_48990
External Databases	DDBJ EMBL GenBank
General Remarks	Steptoe malt cDNA
Type	cDNA STS
PCR primers	CGC ACA CCT CTC CCT CCT TC ATG CCC ATC TTC TGC AAC TC
STS primers	5' CAAGAGCACAGGATGGCGACCGTCC 5' GAGGCAGCCCTGATGTAGTACCAGT
STS size	ca. 1000
Amplification Conditions	STS annealing temperature 52-55 oC
Sequence	L43931 ABC164 ABC164-5
Polymorphism	ABC164 EcoRI
Linkage Group	Group 5
Source Species	Hordeum vulgare
Insert Size	0.6