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GrainGenes Sequence Report: BF292836

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Sequence
BF292836
Contig
Ta.9859.1.A1_at
NSFT03P2_Contig4630
Tracefile
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External Databases
Data at GenBank
Data at EMBL
Data at DDBJ
DB Remark
Locus Source: Triticum turgidum
Keyword
EST
Germplasm
Langdon-16
Species
Triticum turgidum
Triticum turgidum ssp. durum
Cultivar
Langdon-16
Clone Library
Triticum turgidum L. var. durum (durum wheat) whole plant cDNA library
Tissue
All tissues
Developmental Stage
Different growth stages
Data Source
genbankRelease 135, Apr 15 2003
genbankUpdated Nov 2006
Title
WHE2165_E03_J05ZS Triticum turgidum L. var. durum (durum wheat) whole plant cDNA library Triticum turgidum cDNA clone WHE2165_E03_J05, mRNA sequence.
Other Name
WHE2165_E03_J05ZS  [ wEST-mySQL (obsolete) ]
Strain
lab_host E. coli SOLR
DNA Library
TT039E1X
Clone
WHE2165_E03_J05
Remark
DB_xref: taxon:4571
Feature: source: mol_type = 'mRNA';
Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer.
Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Plants were grown in a growth chamber at North Dakota State University (Kianian, Otto, Simons). Tissues collected from seven-day etiolated seedling leaf, stem, root and seed; leaf from plant at fourth leaf stage; spike from pre-anthesis through 20 days after anthesis; flag leaf; leaf and stem tissue from tillers. and root. Total RNA and poly(A) RNA were prepared from each tissue and then pooled, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Akhunov, Chin, Choi, Close, Fenton, Kianian, Otto, Simons, Zhang) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA Homology
[ Hide all but 1 of 91 ]
Ta.9859.1.A1_at781WHE2AFFY
Ta.9859.1.A1_at48WHE2AFFY
Ta.9859.1.A1_at632WHE2AFFY
TaAffx.105749.1.S1_at147WHE2AFFY
TaAffx.105749.1.S1_at62WHE2AFFY
TaAffx.97430.1.S1_at143WHE2AFFY
TaAffx.97430.1.S1_at76WHE2AFFY
TaAffx.11860.1.S1_s_at100WHE2AFFY
TaAffx.11860.1.S1_s_at48WHE2AFFY
TaAffx.11860.2.S1_at100WHE2AFFY
TaAffx.11860.2.S1_at50WHE2AFFY
TaAffx.11860.2.S1_at48WHE2AFFY
Ta.3827.2.A1_at98WHE2AFFY
Ta.3827.2.A1_at66WHE2AFFY
TaAffx.4896.1.A1_at96WHE2AFFY
TaAffx.4896.1.A1_at56WHE2AFFY
Ta.3955.1.A1_at94WHE2AFFY
Ta.2188.2.S1_a_at90WHE2AFFY
Ta.2188.2.S1_x_at90WHE2AFFY
Ta.4544.1.A1_a_at88WHE2AFFY
Ta.1618.1.S1_s_at88WHE2AFFY
Ta.18524.1.S1_at82WHE2AFFY
Ta.18524.1.S1_at52WHE2AFFY
Ta.13208.1.S1_a_at80WHE2AFFY
Ta.13208.1.S1_a_at48WHE2AFFY
Ta.13208.1.S1_at80WHE2AFFY
Ta.13208.1.S1_at48WHE2AFFY
TaAffx.31619.1.S1_at74WHE2AFFY
Ta.7082.1.S1_at74WHE2AFFY
Ta.7082.1.S1_at52WHE2AFFY
Ta.4251.1.A1_at74WHE2AFFY
Ta.28008.1.S1_at74WHE2AFFY
Ta.28008.1.S1_at54WHE2AFFY
Ta.10699.1.A1_at74WHE2AFFY
Ta.4026.1.S1_at72WHE2AFFY
Ta.6765.1.S1_at70WHE2AFFY
Ta.4078.1.S1_at70WHE2AFFY
Ta.4078.1.S1_x_at70WHE2AFFY
TaAffx.105526.1.S1_at68WHE2AFFY
Ta.3833.1.A1_at68WHE2AFFY
Ta.28043.1.S1_at68WHE2AFFY
Ta.28043.1.S1_at48WHE2AFFY
Ta.14201.1.A1_at68WHE2AFFY
TaAffx.92211.1.A1_x_at66WHE2AFFY
TaAffx.92211.1.A1_x_at52WHE2AFFY
TaAffx.92211.1.A1_x_at50WHE2AFFY
Ta.7135.2.S1_at66WHE2AFFY
Ta.26080.2.A1_at66WHE2AFFY
Ta.26110.1.A1_at66WHE2AFFY
TaAffx.78631.1.S1_at64WHE2AFFY
TaAffx.78631.1.S1_x_at64WHE2AFFY
TaAffx.78631.1.S1_x_at50WHE2AFFY
Ta.7811.2.A1_x_at64WHE2AFFY
Ta.7811.1.A1_a_at64WHE2AFFY
Ta.7811.1.A1_x_at64WHE2AFFY
Ta.5087.1.S1_at64WHE2AFFY
Ta.10209.1.A1_at64WHE2AFFY
Ta.27734.1.A1_at62WHE2AFFY
Ta.7041.1.S1_at60WHE2AFFY
TaAffx.53240.1.S1_at58WHE2AFFY
Ta.19141.1.S1_at58WHE2AFFY
TaAffx.56126.1.S1_at56WHE2AFFY
TaAffx.56126.1.S1_x_at56WHE2AFFY
TaAffx.134404.1.A1_at56WHE2AFFY
Ta.6814.1.S1_at56WHE2AFFY
Ta.23676.2.S1_at56WHE2AFFY
Ta.23676.2.S1_at54WHE2AFFY
Ta.23676.2.S1_s_at56WHE2AFFY
Ta.23676.2.S1_s_at54WHE2AFFY
Ta.11329.1.S1_at56WHE2AFFY
Ta.11329.1.S1_at54WHE2AFFY
Ta.10912.1.S1_at56WHE2AFFY
Ta.10272.1.S1_at56WHE2AFFY
TaAffx.3774.1.S1_at54WHE2AFFY
TaAffx.128643.7.S1_at54WHE2AFFY
Ta.16121.1.A1_at54WHE2AFFY
Ta.16121.1.A1_at50WHE2AFFY
TaAffx.16937.1.A1_at52WHE2AFFY
TaAffx.813.1.S1_at50WHE2AFFY
TaAffx.12266.1.A1_at50WHE2AFFY
TaAffx.12266.1.A1_at48WHE2AFFY
TaAffx.12266.1.A1_x_at50WHE2AFFY
TaAffx.12266.1.A1_x_at48WHE2AFFY
Ta.29464.1.A1_at50WHE2AFFY
Ta.19244.1.S1_a_at50WHE2AFFY
Ta.19244.1.S1_x_at50WHE2AFFY
Ta.1595.1.S1_at50WHE2AFFY
Ta.1595.1.S1_at48WHE2AFFY
TaAffx.56525.1.S1_at48WHE2AFFY
Ta.13752.1.S1_at48WHE2AFFY
Ta.13181.1.S1_x_at48WHE2AFFY
DNA
ttcaagggtggcaaaagaacgctatcacgagctatttgcaggagcaaaat
atcaggatagggaaacccaatgatttcctctgcacaaaaacttgactgcg
cccacaaggcaagtcgtcgaagtgacttcaccctccctagggcttggcac
atgcaaattgagtaaatatagagcactgtattttgataatccgatttcaa
gatgtagagtactccctccccgttcgtcttagaaggcctctcttgtgcca
aaagagaaaaaaacaggaatatactactccctccgtccggaaatacttgt
cctaaaaatggatgtatctagacttattttaattatagatacatccattt
gatccatttcgaggacaagtattttcagacggagggagtacgagagagac
atatcttaagggcacgtttgtctgcc

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