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GrainGenes Sequence Report: BE422466

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Sequence
BE422466
Contig
Ta.28317.2.S1_x_at
NSFT03P2_Contig16731
Tracefile
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External Databases
Data at GenBank
Data at EMBL
Data at DDBJ
TIGR Gene Index
TC282190
wEST map position
BE422466
NCBI UniGene
Ta.54568
DB Remark
Locus Source: Triticum aestivum (bread wheat)
UniGene title 'Transcribed locus, strongly similar to NP_001063520.1 Os09g0485900 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Germplasm
CHEYENNE
Species
Triticum aestivum
Cultivar
Cheyenne
Chromosome
3BS
3DS
7AS
Clone Library
Wheat endosperm cDNA library
Tissue
Endosperm
Developmental Stage
5 to 30 days post anthesis seed
Data Source
genbankRelease 135, Apr 15 2003
genbankUpdated Nov 2006
Title
WHE0056_G12_M24ZS Wheat endosperm cDNA library Triticum aestivum cDNA clone WHE0056_G12_M24, mRNA sequence.
Other Name
WHE0056_G12_M24ZS  [ wEST-mySQL (obsolete) ]
Strain
lab_host E. coli SOLR
DNA Library
TA001E1X
Clone
WHE0056_G12_M24
Probe
[Wcl230ct873cn1311]
{SpCl-204}
WHE0056_G12_M24
Remark
DB_xref: taxon:4565
Feature: source: mol_type = 'mRNA';
Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer.
Note: Vector: Lambda ZAP II, excised phagemid; Site_1: EcoRI; Seeds collected, endosperm isolated, and RNA prepared by Susan Altenbach. Library constructed by Stratagene, Inc. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab.
DNA Homology
[ Hide all but 1 of 15 ]
Ta.28317.2.S1_x_at567WHE2AFFY
Ta.28317.2.S1_x_at379WHE2AFFY
Ta.11247.1.A1_x_at351WHE2AFFY
Ta.11247.1.A1_at351WHE2AFFY
Ta.11247.1.A1_at186WHE2AFFY
Ta.28317.3.S1_x_at161WHE2AFFY
Ta.28317.3.S1_at161WHE2AFFY
Ta.26604.1.A1_at145WHE2AFFY
Ta.11247.2.A1_at143WHE2AFFY
Ta.11247.2.A1_at119WHE2AFFY
Ta.11247.2.A1_x_at143WHE2AFFY
Ta.11247.2.A1_x_at119WHE2AFFY
Ta.28317.1.S1_x_at121WHE2AFFY
Ta.28317.1.S1_at121WHE2AFFY
TaAffx.57823.1.S1_at54WHE2AFFY
DNA
ctttataggggtagataagcgtcggacccattctcgcggcgacaatacag
gataataaagataacatgttccatggcacatccctaataattaaccccac
tacaaaattcagtctagagaaagttcaaaatcacgacaacgacgacacaa
agacgatgaaacacggcaggcagaaacacggcttctggtgggacggtttt
tcgcactctactcctccttgatggcgcccttgtcgctgacgtagataccg
tccaagaacttcctgatatccttgttcttgacgtggcatttctggttgat
gagggcggcggagcggg

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