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GrainGenes Reference Report: GNM-51-560

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Reference	GNM-51-560
Title	The first doubled haploid linkage map for cultivated oat.
Journal	Genome
Year	2008
Volume	51
Pages	560-569
Author	Tanhuanpaa P Kalendar R Schulman AH Kiviharju E Tanhuanp P
Abstract	To date, all linkage maps of hexaploid oat (Avena sativa L.) have been constructed using recombinant inbred lines (RILs). Doubled haploids (DHs), however, have the advantage over RILs of their comprehensive homozygosity. DHs have been used for mapping in several cereal species, but in oats the production of large DH populations has only recently become an option. A linkage map of hexaploid oat was constructed using an anther culture-derived DH population (137 individuals) from the F1 individuals of a cross between the Finnish cultivar 'Aslak' and the Swedish cultivar 'Matilda'. The map is composed of 28 linkage groups containing 625 DNA markers: 375 AFLPs (amplified fragment length polymorphisms), 3 IRAPs (inter-retrotransposon amplified polymorphisms), 12 ISSRs (inter simple sequence repeats), 12 microsatellites, 57 RAPDs (random amplified polymorphic DNAs), 59 REMAPs (retrotransposon-microsatellite amplified polymorphisms), 105 SRAPs (sequence-related amplified polymorphisms), and 2 SNPs (single-nucleotide polymorphisms). The total map size is 1526 cM. Over half of the markers in the map showed distorted segregation, with alleles from 'Aslak' usually prevailing. This is explained by the better performance of 'Aslak' in anther culture. Quantitative trait loci affecting some important quality and agronomic traits are being localized on the map.
External Databases	http://dx.doi.org/10.1186/1471-2164-10-39 http://dx.doi.org/10.1139/g08-040
Locus	[ Hide all but 1 of 621 ] A002+ISSR11b A002+ISSR18a A002+ISSR18b A002+ISSR18c A002+ISSR5a A002+ISSR5b A004+ISSR10a A004+ISSR10b A004+ISSR7b A004+ISSR7c A009+ISSR4a A009+ISSR4b A022+ISSR18a A022+ISSR18b A024+ISSR4a A024+ISSR4b A024+ISSR4c A026+ISSR10b A026+ISSR10c A026+ISSR10d A026+ISSR24a A026+ISSR24b A026+ISSR24d A026+ISSR24e A026+ISSR9a A026+ISSR9b A026+ISSR9c A026b A026c A033+ISSR9a A033+ISSR9b A040+ISSR11a A040+ISSR11b A040+ISSR11c A040+ISSR20a A040+ISSR20c A041+ISSR3 A042+ISSR11a A042+ISSR11b A042+ISSR11c A045+ISSR21 A050+ISSR1a A050+ISSR1b A050+ISSR24a A050+ISSR24b A050+ISSR4a A050+ISSR4c ACC-CCGa ACC-CCGf ACC-CCGg ACC-CCGl ACC-CCGm ACC-CCGn ACC-CCTa ACC-CCTb ACC-CCTe ACC-CCTf ACC-CCTh ACC-CCTi ACC-CCTj ACC-CCTl ACC-CGa ACC-CGAa ACC-CGAc ACC-CGAd ACC-CGAf ACC-CGAg ACC-CGAj ACC-CGAl ACC-CGb ACC-CGCa ACC-CGCd ACC-CGCe ACC-CGCf ACC-CGCg ACC-CGCh ACC-CGCi ACC-CGCk ACC-CGCl ACC-CGCm ACC-CGCq ACC-CGCr ACC-CGTa ACC-CGTb ACC-CGTc ACC-CGTd ACC-CGTe ACC-CGTf ACC-CGTi ACC-CGTj ACC-CGTk ACC-CGTl ACC-CGTn ACC-CTGa ACC-CTGb ACC-CTGc ACC-CTGd ACC-CTGe ACC-CTGf ACC-CTTb ACC-CTTc ACC-CTTd ACC-CTTf ACC-CTTg ACC-CTTh ACC-CTTi ACC-CTTj ACCase1 ACCase2 ACG-CAb ACG-CAc ACG-CAd ACG-CAe ACG-CAf ACG-CCCb ACG-CCCc ACG-CCCd ACG-CCCf ACG-CCCg ACG-CCGa ACG-CCGb ACG-CCGc ACG-CCGe ACG-CCGf ACG-CCGg ACG-CCGh ACG-CCGi ACG-CCGj ACG-CGAa ACG-CGAb ACG-CGAc ACG-CGAd ACG-CGAe ACG-CGAf ACG-CGAh ACG-CGAj ACG-CGAk ACG-CGAl ACG-CGTa ACG-CGTb ACG-CGTc ACG-CGTe ACG-CGTg ACG-CGTh ACG-CGTi ACG-CGTj ACG-CGTk ACG-CTAd ACG-CTAe ACG-CTAg ACG-CTAh ACG-CTAi ACG-CTAk ACG-CTTa ACG-CTTb ACG-CTTc ACG-CTTd ACG-CTTe ACG-CTTf ACG-CTTg ACG-CTTh ACG-CTTi ACG-CTTk ACG-CTTm ACG-CTTn AM102 AM134 AM1a AM1b AM3 AM31 AM38 AM4 AM5 AM83 Astavea ATA-CACa ATA-CACb ATA-CACc ATA-CACd ATA-CACe ATA-CAGa ATA-CAGb ATA-CAGc ATA-CAGd ATA-CAGe ATA-CAGg ATA-CAGh ATA-CAGi ATA-CAGj ATA-CCCa ATA-CCCb ATA-CCCd ATA-CCCe ATA-CCCf ATA-CCCg ATA-CCCh ATA-CCCi ATA-CCGa ATA-CCGc ATA-CCGd ATA-CCGe ATA-CCGf ATA-CCGh ATA-CCGi ATA-CGAa ATA-CGAb ATA-CGCa ATA-CGCf ATA-CGCg ATA-CGCh ATA-CGCi ATA-CGCj ATA-CGCk ATA-CGCl ATA-CGCm ATA-CGCn ATA-CGTb ATA-CGTe ATA-CGTf ATA-CGTh ATA-CTCa ATA-CTCb ATA-CTCc ATA-CTCd ATA-CTCe ATA-CTCg ATA-CTCi ATA-CTGa ATA-CTGb ATA-CTGc ATA-CTGd CAC-CAGa CAC-CAGf CAC-CAGg CAC-CAGh CAC-CAGi CAC-CAGk CAC-CAGl CAC-CAGm CAC-CAGn CAC-CAGo CAC-CAGp CAC-CCAb CAC-CCAc CAC-CCAd CAC-CCAe CAC-CCAf CAC-CCAg CAC-CCAh CAC-CCAi CAC-CCCa CAC-CCCc CAC-CCCd CAC-CCCe CAC-CCCf CAC-CCCg CAC-CCGa CAC-CCGb CAC-CCGc CAC-CCGf CAC-CCGg CAC-CCGh CAC-CCGj CAC-CCGk CAC-CCGl CAC-CCGm CAC-CCGn CAC-CCTa CAC-CCTb CAC-CCTd CAC-CCTf CAC-CCTg CAC-CCTh CAC-CCTi CAC-CCTj CAC-CCTk CAC-CCTl CAC-CGAb CAC-CGAc CAC-CGAd CAC-CGAe CAC-CGAf CAC-CGAg CAC-CGAi CAC-CGAj CAC-CGAk CAC-CGAl CAC-CGAn CAC-CGAo CAC-CGAp CAC-CGAq CAC-CGCa CAC-CGCb CAC-CGCc CAC-CGCd CAC-CGCe CAC-CGCf CAC-CGCg CAC-CGCh CAC-CGTa CAC-CGTb CAC-CGTd CAC-CGTe CAC-CGTg CAC-CGTh CAC-CGTi Cd CGC-CCGa CGC-CCGb CGC-CCGd CGC-CCGe CGC-CCGf CGC-CCGg CGC-CCGh CGC-CCGi CGC-CCGj CGC-CGCa CGC-CGCb CGC-CGCc CGC-CGCd CGC-CGCe CGC-CGCf CGC-CGCi CGC-CGCj CGC-CGTa CGC-CGTb CGC-CGTc CGG-CATc CGG-CATe CGG-CATf CGG-CATg CGG-CATj CGG-CATl CGG-CATm CGG-CATo CGG-CATp CGG-CATq CGG-CATr CGG-CCGb CGG-CCGc CGG-CCGd CGG-CCGe CGG-CCGf CGG-CCGi CGG-CCGj CGG-CCGk CGG-CCGl CGG-CGAa CGG-CGAb CGG-CGAc CGG-CGAd CGG-CGAg CGG-CGAh CGG-CGAi D004+ISSR4a D004+ISSR4d D004+ISSR4e D005+ISSR20a D005+ISSR24a D005+ISSR24b D005+ISSR24c D005+ISSR24d D005+ISSR7b D005a Dw6 F004+ISSR14 F0778+ISSR9a GC-CCCa GC-CCCb GC-CCCc GC-CCCd GC-CCCf GC-CCCg GC-CCCh GC-CCGa GC-CCGb GC-CCGc GC-CCGd GC-CCGe GC-CCGf GC-CCGg GC-CCTb GC-CCTc GC-CCTd GC-CCTf GC-CCTg GC-CGCa GC-CGCb GC-CGCd GC-CGCe GC-CGCg GC-CGCj GC-CGCk GC-CGCl GC-CGCm GC-CGCn GC-CGCo GC-CGCp GC-CGCq GC-CGCr GC-CGTa GC-CGTb GC-CGTc GC-CGTd GC-CGTe GC-CGTf GC-CGTg GC-CGTh GC-CGTi GC-CGTj GC-CGTl GC-CTAb GC-CTAc GC-CTAe GC-CTAf GC-CTAg GC-CTAi GC-CTAj GC-CTAk GC-CTTa GC-CTTc GC-CTTd GC-CTTe GC-CTTf GC-CTTg GC-CTTh GC-CTTi GC-CTTj GC-CTTk GG-CGCa GG-CGCb GG-CGCc GG-CGCd GG-CGCg GG-CGCh GG-CGCi GG-CGTa GG-CGTb GG-CGTc GG-CGTd GG-CGTf GG-CTGa GG-CTGb GG-CTGc HVM20 ISSR2a ISSR2b ISSR2c ISSR4a ISSR4b ISSR4e ISSR5a ISSR5b ISSR7a ISSR7b ISSR7d ISSR7e me1em10a me1em10b me1em12a me1em15 me1em16a me1em1a me1em1b me1em1c me1em1d me1em2a me1em2b me1em3a me1em3b me1em3c me1em4a me1em4b me1em4d me1em4e me1em6b me1em6c me1em6d me1em6e me1em8a me1em8b me1em8c me1em8d me2em12a me2em12b me2em13b me2em1a me2em1b me2em1c me2em1d me2em1e me2em1f me2em2a me2em2b me2em2c me2em3a me2em3c me2em3d me2em3e me2em3f me2em4a me2em4b me2em4c me2em4d me2em6a me2em6b me3em14a me3em14b me3em16 me3em1a me3em1b me3em1c me3em5b me3em5c me3em8a me3em8b me3em9 me4em10 me4em12a me4em12d me4em12e me4em13a me4em13c me4em13d me4em15a me4em15b me4em15c me4em1b me4em1c me4em1d me4em1e me4em3a me4em3b me4em3c me4em3d me4em4 me4em5a me4em5b me4em5c me4em5d me5em10a me5em10c me5em1a me5em1b me5em1c me5em3a me5em3b me5em3c me5em3d me5em4a me5em4b me5em5b me5em5d me5em6a me5em6c me5em8a me5em8b me5em8c me5em9b me5em9c me5em9d me5em9e OPA-08a OPA-08b OPA-09b OPA-09c OPA-09d OPA-19a OPA-19b OPAA-12a OPAA-12b OPAA-12c OPAB-11 OPAB-13 OPAB-18 OPAB-19a OPAB-19b OPAD-02a OPAF-07a OPAF-07b OPAF-07c OPAF-10b OPAF-10c OPAF-12b OPAF-18 OPAF-20a OPAF-20b OPAF-20c OPB-01a OPB-01b OPB-03 OPB-06a OPB-06b OPB-09a OPB-09b OPB-09c OPB-10a OPB-10c OPB-10d OPC-06a OPC-06b OPC-07a OPC-07b OPC-07c OPC-09a OPC-09b OPC-10b OPG-08a OPG-08b OPH-07a OPH-07b OPH-07c OPH-07d OPH-11 OPK-09a OPK-09b OPK-11a OPK-11b OPK-11c SNPI11
Map Data	Oat, AxM Doubled Haploid, 2008
Probe	ISSR5 [ Show all 16 ]

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