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GrainGenes Reference Report: GEN-149-2007

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Reference	GEN-149-2007
Title	A microsatellite map of wheat
Journal	Genetics
Year	1998
Volume	149
Pages	2007-2023
Author	Roder MS [ Show all 9 ]
Abstract	Hexaploid bread wheat (Triticum aestivum L. em. Thell) is one of the world's most important crop plants and displays a very low level of intraspecific polymorphism. We report the development of highly polymorphic microsatellite markers using procedures optimized for the large wheat genome. The isolation of microsatellite-containing clones from hypomethylated regions of the wheat genome increased the proportion of useful markers almost twofold. The majority (80%) of primer sets developed are genome-specific and detect only a single locus in one of the three genomes of bread wheat (A, B, or D). Only 20% of the markers detect more than one locus. A total of 279 loci amplified by 230 primer sets were placed onto a genetic framework map composed of RFLPs previously mapped in the reference population of the International Triticeae Mapping Initiative (ITMI) Opata 85 x W7984. Sixty-five microsatellites were mapped at a LOD >2.5, and 214 microsatellites were assigned to the most likely intervals. Ninety-three loci were mapped to the A genome, 115 to the B genome, and 71 to the D genome. The markers are randomly distributed along the linkage map, with clustering in several centromeric regions.
External Databases	Pubmed: 9691054
Locus	Xgwm99-1A [ Show all 278 ]
Map Data	Wheat, Synthetic x Opata, SSR
Polymorphism	WMS2 [ Show all 230 ]
Probe	[ Hide all but 1 of 229 ] WMS99 WMS11 WMS124 WMS642 WMS210 WMS122 WMS339 WMS515 WMS558 WMS630 WMS304 WMS294 WMS311 WMS356 WMS429 WMS148 WMS55 WMS111 WMS261 WMS102 WMS30 WMS539 WMS608 WMS301 WMS349 WMS2 WMS480 WMS533 WMS493 WMS285 WMS156 WMS340 WMS161 WMS341 WMS456 WMS52 WMS645 WMS664 WMS383 WMS160 WMS269 WMS397 WMS165 WMS368 WMS513 WMS192 WMS149 WMS6 WMS609 WMS129 WMS293 WMS639 WMS234 WMS499 WMS271 WMS408 WMS190 WMS205 WMS583 WMS174 WMS292 WMS212 WMS565 WMS654 WMS334 WMS325 WMS191 WMS219 WMS635 WMS332 WMS573 WMS333 WMS296 WMS437 WMS37 WMS136 WMS497 WMS413 WMS153 WMS268 WMS140 WMS458 WMS359 WMS328 WMS473 WMS312 WMS374 WMS388 WMS501 WMS484 WMS320 WMS666 WMS391 WMS389 WMS566 WMS299 WMS314 WMS3 WMS494 WMS350 WMS495 WMS186 WMS371 WMS604 WMS358 WMS182 WMS132 WMS193 WMS107 WMS88 WMS282 WMS611 WMS577 WMS44 WMS18 WMS498 WMS275 WMS95 WMS372 WMS445 WMS526 WMS614 WMS410 WMS32 WMS133 WMS155 WMS77 WMS376 WMS181 WMS610 WMS265 WMS637 WMS538 WMS251 WMS154 WMS126 WMS443 WMS427 WMS518 WMS361 WMS60 WMS537 WMS400 WMS46 WMS274 WMS259 WMS106 WMS382 WMS455 WMS249 WMS369 WMS131 WMS194 WMS169 WMS428 WMS33 WMS164 WMS357 WMS135 WMS550 WMS264 WMS582 WMS273 WMS403 WMS337 WMS232 WMS636 WMS512 WMS71 WMS448 WMS425 WMS10 WMS47 WMS257 WMS319 WMS120 WMS16 WMS157 WMS5 WMS162 WMS247 WMS114 WMS72 WMS108 WMS183 WMS4 WMS113 WMS66 WMS415 WMS179 WMS291 WMS540 WMS159 WMS68 WMS67 WMS335 WMS213 WMS554 WMS121 WMS272 WMS459 WMS570 WMS617 WMS613 WMS508 WMS70 WMS644 WMS626 WMS233 WMS471 WMS130 WMS276 WMS63 WMS297 WMS43 WMS302 WMS344 WMS146 WMS295 WMS547 WMS544 WMS674 WMS595 WMS601 WMS260 WMS284 WMS112 WMS624 WMS569
Image	Ta-Synthetic/Opata-SSR group 1 maps [ Show all 7 ]
Summarized in	MAS Wheat. Bringing Genomics to the Wheat Fields. Disease Resistance. Stripe Rust Resistance. YrR61 MAS Wheat. Marker Assisted Selection in Wheat.

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