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GrainGenes Reference Report: GEN-149-2007

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Reference	GEN-149-2007
Title	A microsatellite map of wheat
Journal	Genetics
Year	1998
Volume	149
Pages	2007-2023
Author	Roder MS [ Show all 9 ]
Abstract	Hexaploid bread wheat (Triticum aestivum L. em. Thell) is one of the world's most important crop plants and displays a very low level of intraspecific polymorphism. We report the development of highly polymorphic microsatellite markers using procedures optimized for the large wheat genome. The isolation of microsatellite-containing clones from hypomethylated regions of the wheat genome increased the proportion of useful markers almost twofold. The majority (80%) of primer sets developed are genome-specific and detect only a single locus in one of the three genomes of bread wheat (A, B, or D). Only 20% of the markers detect more than one locus. A total of 279 loci amplified by 230 primer sets were placed onto a genetic framework map composed of RFLPs previously mapped in the reference population of the International Triticeae Mapping Initiative (ITMI) Opata 85 x W7984. Sixty-five microsatellites were mapped at a LOD >2.5, and 214 microsatellites were assigned to the most likely intervals. Ninety-three loci were mapped to the A genome, 115 to the B genome, and 71 to the D genome. The markers are randomly distributed along the linkage map, with clustering in several centromeric regions.
External Databases	Pubmed: 9691054
Locus	Xgwm99-1A [ Show all 278 ]
Map Data	Wheat, Synthetic x Opata, SSR
Polymorphism	[ Hide all but 1 of 230 ] WMS2 WMS3 WMS4 WMS5 WMS6 WMS10 WMS11 WMS16 WMS18 WMS30 WMS32 WMS33 WMS37 WMS43 WMS44 WMS46 WMS47 WMS52 WMS55 WMS60 WMS63 WMS66 WMS67 WMS68 WMS70 WMS71 WMS72 WMS77 WMS88 WMS95 WMS99 WMS102 WMS106 WMS107 WMS108 WMS111 WMS112 WMS113 WMS114 WMS120 WMS121 WMS122 WMS124 WMS126 WMS129 WMS130 WMS131 WMS132 WMS133 WMS135 WMS136 WMS140 WMS146 WMS148 WMS149 WMS153 WMS154 WMS155 WMS156 WMS157 WMS159 WMS160 WMS161 WMS162 WMS164 WMS165 WMS169 WMS174 WMS179 WMS181 WMS182 WMS183 WMS186 WMS190 WMS191 WMS192 WMS193 WMS194 WMS205 WMS210 WMS212 WMS213 WMS219 WMS232 WMS233 WMS234 WMS247 WMS249 WMS251 WMS257 WMS259 WMS260 WMS261 WMS264 WMS265 WMS268 WMS269 WMS271 WMS272 WMS273 WMS274 WMS275 WMS276 WMS282 WMS284 WMS285 WMS291 WMS292 WMS293 WMS294 WMS295 WMS296 WMS297 WMS299 WMS301 WMS302 WMS304 WMS311 WMS312 WMS314 WMS319 WMS320 WMS325 WMS328 WMS332 WMS333 WMS334 WMS335 WMS337 WMS339 WMS340 WMS341 WMS344 WMS349 WMS350 WMS356 WMS357 WMS358 WMS359 WMS361 WMS368 WMS369 WMS371 WMS372 WMS374 WMS376 WMS382 WMS383 WMS388 WMS389 WMS391 WMS397 WMS400 WMS403 WMS408 WMS410 WMS413 WMS415 WMS425 WMS427 WMS428 WMS429 WMS437 WMS443 WMS445 WMS448 WMS455 WMS456 WMS458 WMS459 WMS469 WMS471 WMS473 WMS480 WMS484 WMS493 WMS494 WMS495 WMS497 WMS498 WMS499 WMS501 WMS508 WMS512 WMS513 WMS515 WMS518 WMS526 WMS533 WMS537 WMS538 WMS539 WMS540 WMS544 WMS547 WMS550 WMS554 WMS558 WMS565 WMS566 WMS569 WMS570 WMS573 WMS577 WMS582 WMS583 WMS595 WMS601 WMS604 WMS608 WMS609 WMS610 WMS611 WMS613 WMS614 WMS617 WMS624 WMS626 WMS630 WMS635 WMS636 WMS637 WMS639 WMS642 WMS644 WMS645 WMS654 WMS664 WMS666 WMS674
Probe	WMS99 [ Show all 229 ]
Image	Ta-Synthetic/Opata-SSR group 1 maps [ Show all 7 ]
Summarized in	MAS Wheat. Bringing Genomics to the Wheat Fields. Disease Resistance. Stripe Rust Resistance. YrR61 MAS Wheat. Marker Assisted Selection in Wheat.

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