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GrainGenes Reference Report: GEN-149-2007

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Reference	GEN-149-2007
Title	A microsatellite map of wheat
Journal	Genetics
Year	1998
Volume	149
Pages	2007-2023
Author	Roder MS [ Show all 9 ]
Abstract	Hexaploid bread wheat (Triticum aestivum L. em. Thell) is one of the world's most important crop plants and displays a very low level of intraspecific polymorphism. We report the development of highly polymorphic microsatellite markers using procedures optimized for the large wheat genome. The isolation of microsatellite-containing clones from hypomethylated regions of the wheat genome increased the proportion of useful markers almost twofold. The majority (80%) of primer sets developed are genome-specific and detect only a single locus in one of the three genomes of bread wheat (A, B, or D). Only 20% of the markers detect more than one locus. A total of 279 loci amplified by 230 primer sets were placed onto a genetic framework map composed of RFLPs previously mapped in the reference population of the International Triticeae Mapping Initiative (ITMI) Opata 85 x W7984. Sixty-five microsatellites were mapped at a LOD >2.5, and 214 microsatellites were assigned to the most likely intervals. Ninety-three loci were mapped to the A genome, 115 to the B genome, and 71 to the D genome. The markers are randomly distributed along the linkage map, with clustering in several centromeric regions.
External Databases	Pubmed: 9691054
Locus	[ Hide all but 1 of 278 ] Xgwm99-1A Xgwm11-1B Xgwm124-1B Xgwm642-1D Xgwm122-2A Xgwm339-2A Xgwm515-2A Xgwm558-2A Xgwm294-2A Xgwm356-2A Xgwm429-2B Xgwm148-2B Xgwm261-2D Xgwm102-2D Xgwm539-2D Xgwm301-2D Xgwm349-2D Xgwm2-3A Xgwm480-3A Xgwm493-3B Xgwm285-3B Xgwm340-3B Xgwm161-3D Xgwm341-3D Xgwm456-3D Xgwm52-3D Xgwm645-3D Xgwm664-3D Xgwm383-3D Xgwm160-4A Xgwm397-4A Xgwm368-4B Xgwm513-4B Xgwm149-4B Xgwm609-4D Xgwm129-5A Xgwm293-5A Xgwm234-5B Xgwm499-5B Xgwm408-5B Xgwm190-5D Xgwm205-5D Xgwm583-5D Xgwm174-5D Xgwm292-5D Xgwm212-5D Xgwm565-5D Xgwm654-5D Xgwm334-6A Xgwm191-6B Xgwm219-6B Xgwm469-6D Xgwm332-7A Xgwm573-7B Xgwm333-7B Xgwm437-7D Xgwm37-7D Xgwm136-1A Xgwm413-1B Xgwm153-1B Xgwm268-1B Xgwm140-1B Xgwm458-1D Xgwm359-2A Xgwm328-2A Xgwm473-2A Xgwm312-2A Xgwm210-2B Xgwm374-2B Xgwm630-2B Xgwm388-2B Xgwm501-2B Xgwm484-2D Xgwm320-2D Xgwm391-3A Xgwm389-3B Xgwm566-3B Xgwm299-3B Xgwm314-3D Xgwm3-3D Xgwm186-5A Xgwm371-5B Xgwm604-5B Xgwm182-5D Xgwm269-5D Xgwm132-6B Xgwm193-6B Xgwm88-6B Xgwm282-7A Xgwm611-7B Xgwm577-7B Xgwm44-7D Xgwm274-1B Xgwm259-1B Xgwm106-1D Xgwm382-2A Xgwm455-2D Xgwm296-2D Xgwm249-2D Xgwm608-2D Xgwm382-2D Xgwm369-3A Xgwm131-3B Xgwm610-4A Xgwm165-4A Xgwm107-4B Xgwm165-4B Xgwm495-4B Xgwm6-4B Xgwm608-4D Xgwm194-4D Xgwm205-5A Xgwm358-5D Xgwm169-6A Xgwm427-6A Xgwm55-6D Xgwm428-7D Xgwm33-1A Xgwm164-1A Xgwm357-1A Xgwm135-1A Xgwm497-1A Xgwm666-1A Xgwm550-1B Xgwm33-1B Xgwm264-1B Xgwm18-1B Xgwm582-1B Xgwm273-1B Xgwm498-1B Xgwm131-1B Xgwm403-1B Xgwm33-1D Xgwm337-1D Xgwm232-1D Xgwm636-2A Xgwm614-2A Xgwm497-2A Xgwm296-2A Xgwm512-2A Xgwm71-2A.1 Xgwm372-2A Xgwm275-2A Xgwm448-2A Xgwm425-2A Xgwm95-2A Xgwm10-2A Xgwm249-2A Xgwm71-2A.2 Xgwm445-2A Xgwm47-2A.2 Xgwm47-2A.1 Xgwm265-2A Xgwm257-2B Xgwm410-2B Xgwm55-2B.2 Xgwm319-2B Xgwm129-2B Xgwm55-2B.1 Xgwm120-2B Xgwm16-2B Xgwm47-2B Xgwm210-2D Xgwm515-2D Xgwm157-2D Xgwm30-3A Xgwm5-3A Xgwm32-3A Xgwm162-3A Xgwm533-3B.1 Xgwm533-3B.2 Xgwm264-3B Xgwm72-3B Xgwm376-3B Xgwm77-3B Xgwm108-3B Xgwm114-3B Xgwm181-3B Xgwm71-3D Xgwm183-3D Xgwm2-3D Xgwm497-3D Xgwm4-4A Xgwm637-4A Xgwm113-4B Xgwm66-4B Xgwm251-4B Xgwm538-4B Xgwm165-4D Xgwm154-5A Xgwm415-5A Xgwm304-5A Xgwm156-5A Xgwm126-5A Xgwm179-5A Xgwm291-5A Xgwm410-5A Xgwm66-5B Xgwm540-5B Xgwm191-5B Xgwm159-5B Xgwm68-5B Xgwm67-5B Xgwm335-5B Xgwm213-5B Xgwm554-5B Xgwm639-5D Xgwm121-5D Xgwm271-5D Xgwm272-5D Xgwm459-6A Xgwm494-6A Xgwm570-6A Xgwm617-6A Xgwm613-6B Xgwm518-6B Xgwm508-6B Xgwm133-6B Xgwm361-6B Xgwm70-6B Xgwm644-6B Xgwm626-6B Xgwm325-6D Xgwm635-7A Xgwm666-7A Xgwm233-7A Xgwm350-7A Xgwm471-7A Xgwm60-7A Xgwm130-7A Xgwm573-7A Xgwm276-7A Xgwm63-7A Xgwm400-7B Xgwm16-7B Xgwm46-7B Xgwm297-7B Xgwm43-7B Xgwm644-7B Xgwm302-7B Xgwm274-7B Xgwm344-7B Xgwm146-7B Xgwm295-7D Xgwm121-7D Xgwm547-3B Xgwm247-3B Xgwm537-7B Xgwm544-5B Xgwm526-2B Xgwm674-3A Xgwm601-4A Xgwm639-5A Xgwm666-5A Xgwm639-5B Xgwm260-7A Xgwm30-2D Xgwm155-3A Xgwm111-7D Xgwm350-7D Xgwm443-5B Xgwm569-7B Xgwm16-5D Xgwm112-7B Xgwm112-3B Xgwm114-3D Xgwm68-7B Xgwm191-2B Xgwm624-4D Xgwm635-7D Xgwm284-3B Xgwm595-5A Xgwm617-5A Xgwm666-3A.1 Xgwm666-3A.2 Xgwm311-2A Xgwm382-2B Xgwm311-2D
Map Data	Wheat, Synthetic x Opata, SSR
Polymorphism	WMS2 [ Show all 230 ]
Probe	WMS99 [ Show all 229 ]
Image	Ta-Synthetic/Opata-SSR group 1 maps [ Show all 7 ]
Summarized in	MAS Wheat. Bringing Genomics to the Wheat Fields. Disease Resistance. Stripe Rust Resistance. YrR61 MAS Wheat. Marker Assisted Selection in Wheat.

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