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GrainGenes Reference Report: Watkins-2024

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Reference	Watkins-2024
Title	Harnessing Landrace Diversity Empowers Wheat Breeding for Climate Resilience
Journal	Nature
Year	2024
Remark	Supplemental Tables are listed below: [ Show all 54 ]
Author	Cheng S [ Show all 89 ]
Abstract	Breeding crops resilient to climate change is urgently needed to help ensure food security. A key challenge is to harness genetic diversity to optimise adaptation, yield, stress resilience and nutrition. We examined the genetic and phenotypic diversity of the A.E. Watkins landrace collection of bread wheat (Triticum aestivum), a major global cereal, through whole-genome re-sequencing (827 Watkins landraces and 208 modern cultivars) and in-depth field evaluation spanning a decade. We discovered that modern cultivars are derived from just two of the seven ancestral groups of wheat, leaving five groups as previously untapped sources for breeding. This provides access to landrace-specific functional variations using structured germplasm, genotyping and informatics resources. Employing complementary genetic populations and approaches, we identified thousands of high-resolution quantitative trait loci (QTL) and significant marker-trait associations for major traits, revealing many Watkins-unique loci that can confer superior traits in modern wheat. Furthermore, we identified and functionally verified causative genes for climate-change adaptation, nutritional enhancement and resistance to wheat blast. Finally, we assessed the phenotypic effects of 44,338 Watkins-unique haplotypes, introgressed from 143 prioritised QTL in the context of modern cultivars, bridging the gap between landrace diversity and current breeding. This study establishes a framework for systematically utilising genetic diversity in crop improvement to achieve sustainable food security.
External Databases	https://doi.org/10.1101/2023.10.04.560903
Gene	1fehw3 (Triticum) [ Show all 237 ]
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QTL	AwnCol_PBI_b1990_Natural-1B [ Show all 4708 ]

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.