Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Reference Report: TAG-135-1355

[Submit comment/correction]

Reference	TAG-135-1355
Title	Mining the Vavilov wheat diversity panel for new sources of adult plant resistance to stripe rust
Journal	Theoretical and Applied Genetics
Year	2022
Volume	135
Pages	1355-1373
Author	DT Jambuthenne [ Show all 14 ]
Abstract	Wheat stripe rust (YR) caused by Puccinia striiformis f. sp. tritici (Pst) poses a significant threat to global food security. Resistance genes commonly found in many wheat varieties have been rendered ineffective due to the rapid evolution of the pathogen. To identify novel sources of adult plant resistance (APR), 292 accessions from the N.I. Vavilov Institute of Plant Genetic Resources, Saint Petersburg, Russia, were screened for known APR genes (i.e. Yr18, Yr29, Yr46, Yr33, Yr39 and Yr59) using linked polymerase chain reaction (PCR) molecular markers. Accessions were evaluated against Pst (pathotype 134 E16 A + Yr17 + Yr27) at seedling and adult plant stages across multiple years (2014, 2015 and 2016) in Australia. Phenotypic analyses identified 132 lines that potentially carry novel sources of APR to YR. Genome-wide association studies (GWAS) identified 68 significant marker-trait associations (P < 0.001) for YR resistance, representing 47 independent quantitative trait loci (QTL) regions. Fourteen genomic regions overlapped with previously reported Yr genes, including Yr29, Yr56, Yr5, Yr43, Yr57, Yr30, Yr46, Yr47, Yr35, Yr36, Yrxy1, Yr59, Yr52 and YrYL. In total, seven QTL (positioned on chromosomes 1D, 2A, 3A, 3D, 5D, 7B and 7D) did not collocate with previously reported genes or QTL, indicating the presence of promising novel resistance factors. Overall, the Vavilov diversity panel provides a rich source of new alleles which could be used to broaden the genetic bases of YR resistance in modern wheat varieties.
External Databases	https://doi.org/10.1007/s00122-022-04037-8
Locus	DArT1219437 [ Show all 65 ]
Probe	[ Hide all but 1 of 65 ] DArT1219437 DArT1119286 DArT1862252 DArT1229892 DArT2295954 DArT1255550 DArT1093102 DArT1122504 DArT1862406 DArT1183380 DArT2289349 DArT1235357 DArT1233396 DArT3064531 DArT2322232 DArT981525 DArT1046333 DArT2322248 DArT1236960 DArT1117771 DArT1337290 DArT1296890 DArT1297955 DArT4663965 DArT1298829 DArT2246033 DArT2338436 DArT2243695 DArT1123104 DArT2253468 DArT2295584 DArT1116501 DArT1237203 DArT2307351 DArT1239212 DArT1120960 DArT1131408 DArT3021792 DArT1117919 DArT1127003 DArT1088238 DArT1125706 DArT1104944 DArT1128792 DArT1107669 DArT991465 DArT3022417 DArT1302727 DArT1097180 DArT1121581 DArT1229248 DArT2290856 DArT1058394 DArT2293763 DArT1109194 DArT1244188 DArT1090077 DArT1126816 DArT1059624 DArT1259637 DArT1298605 DArT3026338 DArT1159261 DArT1105401 DArT2303363
QTL	qNV.Yr-1B.1 [ Show all 46 ]

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.