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GrainGenes Reference Report: SCI-361:6403

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Reference	SCI-361:6403
Title	Shifting the limits in wheat research and breeding using a fully annotated reference genome
Journal	Science
Year	2018
Volume	361
Author	[ Hide all but 1 of 202 ] IWGSC Appels R Eversole K Stein N Feuillet C Keller B Jane Rogers6 Pozniak CJ Choulet F Distelfeld A Poland J Ronen G Sharpe AG Barad O Baruch K Keeble-Gagnere G Mascher M Ben-Zvi G Josselin A-A Himmelbach A Balfourier F Gutierrez-Gonzalez J Hayden M Koh CS Muehlbauer G Pasam RK Paux E Rigault P Tibbits J Tiwari V Spannagl M Lang D Gundlach H Haberer G Mayer KFX Ormanbekova D Prade V Simkova H Wicker T Swarbreck D Rimbert H Felder M Guilhot N Kaithakottil G Keilwagen K Leroy P Lux T Twardziok S Venturini L Juhasz A Abrouk M Fischer I Uauy C Borrill P Ramirez-Gonzalez RH Dominique Arnaud D Chalabi S Chalhoub B Cory A Datla R Davey MW Jacobs J Robinson SJ Steuernagel B van Ex F Wulff BBH Benhamed M Bendahmane A Concia L Latrasse D Bartos J Bellec A Berges H Dolezel J Frenkel Z Gill B Korol A Letellier T Olsen O-A Singh K Valarik M van der Vossen E Vautrin S Weining S Fahima T Glikson V Raats D Cihalikova J Toegelova H Vrana J Sourdille P Darrier B Barabaschi D Cattivelli L Hernandez P Galvez S Budak H Jones JDG Witek L Yu G Small I Melonek K Zhou R Belova T Kanyuka K King R Nilsen K Walkowiak S Cuthbert R Knox R Wiebe L Xiang D Rohde A Golds T Cizkova K Akpinar BA Biyiklioglu S Gao L N’Daiye A Kubalakova M Safar J Alfama F Adam-Blondon A-F Flores R Guerche C Loaec M Quesneville H Condie J Ens J Maclachlan R Tan Y Alberti A Aury J-M Barbe V ouloux A Cruaud C Labadie K Mangenot S Wincker P Kaur G Luo M Sehgal S Chhuneja P Gupta OP Jindal S Kaur P Malik P Sharma P Yadav B Singh NK Khurana JP Chaudhary C Khurana P Kumar V Mahato A Mathur S Sevanthi A Sharma N Tomar RS Holusova L Plihal P Clark MD Heavens D Kettleborough G Wright J Balcarkova B Hu Y Salina E Ravin N Skryabin K Beletsky A Kadnikov V Mardanov A Nesterov M Rakitin A Sergeeva E Handa H Kanamori H Katagiri S Kobayashi F Nasuda S Tanaka T Wu J Cattonaro F Jiumeng M Kugler K Pfeifer M Sandve S Xun X Zhan B Batley J Bayer PE Edwards D Hayashi S Tulpova Z Visendi P Cui L Du X Feng K Nie X Tong W Wang L
Abstract	An annotated reference sequence representing the hexaploid bread wheat genome in 21 pseudomolecules has been analyzed to identify the distribution and genomic context of coding and noncoding elements across the A, B, and D subgenomes. With an estimated coverage of 94% of the genome and containing 107,891 high-confidence gene models, this assembly enabled the discovery of tissue- and developmental stage-related coexpression networks by providing a transcriptome atlas representing major stages of wheat development. Dynamics of complex gene families involved in environmental adaptation and end-use quality were revealed at subgenome resolution and contextualized to known agronomic single-gene or quantitative trait loci. This community resource establishes the foundation for accelerating wheat research and application through improved understanding of wheat biology and genomics-assisted breeding.
External Databases	https://doi.org/10.1126/science.aar7191
Locus	TraesCS1A01G000100.1 [ Show all 239858 ]
Map Data	Wheat, 2018, IWGSC CS RefSeq v1.0
Probe	TraesCS1A01G000100 [ Show all 106075 ]
Sequence	TraesCS1A01G000100.1 [ Show all 269724 ]

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