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GrainGenes Reference Report: TAG-128-1083

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Reference	TAG-128-1083
Title	Genome-wide association mapping for stripe rust (Puccinia striiformis F. sp. tritici) in US Pacific Northwest winter wheat (Triticum aestivum L.)
Journal	Theoretical and Applied Genetics
Year	2015
Volume	128
Pages	1083-1101
Author	Naruoka Y Garland-Campbell KA Carter AH
Abstract	Stripe rust (Puccinia striiformis F. sp. tritici; also known as yellow rust) is a globally devastating disease of wheat (Triticum aestivum L.) and a major threat to wheat production in the US Pacific Northwest (PNW), therefore both adult plant and all-stage resistance have been introduced into the winter wheat breeding programs in the PNW. The goal of this study was to identify quantitative trait loci (QTL) and molecular markers for these resistances through genome-wide association (GWAS) mapping in winter wheat accessions adapted to the PNW. Stripe rust response for adult plants was evaluated in naturally occurring epidemics in a total of nine environments in Washington State, USA. Seedling response was evaluated with three races under artificial inoculation in the greenhouse. The panel was genotyped with the 9K Illumina Wheat single nucleotide polymorphism (SNP) array and additional markers linked to previously reported genes and QTL for stripe rust resistance. The population was grouped into three sub-populations. Markers linked to Yr17 and previously reported QTL for stripe rust resistance were identified on chromosomes 1B, 2A, and 2B. Potentially novel QTL associated with race-specific seedling response were identified on chromosomes 1B and 1D. Potentially novel QTL associated with adult plant response were located on chromosomes 2A, 2B, 3B, 4A, and 4B. Stripe rust was reduced when multiple alleles for resistance were present. The resistant allele frequencies were different among sub-populations in the panel. This information provides breeders with germplasm and closely linked markers for stripe rust resistance to facilitate the transfer of multiple loci for durable stripe rust resistance into wheat breeding lines and cultivars.
External Databases	https://doi.org/10.1007/s00122-015-2492-2
Germplasm	[ Hide all but 1 of 402 ] 5J030648-4 5J030662-13 5J030662-4 5J030731-2 5J030750-1 5J040024-1 5J040024-2 5J040039-1 5J040048-1 5J040094-1 5J040094-2 5J040150-1 5J040612 5J040736 5J040746 5J040847 5J040852 5J040879 5J040924 5J040928 5J040965 5J041120 6J030184-2 98X371-3C 98X402-1C 98X471-2C 98X472-4C 98X525-3C 98X551-1C 99X13-3C 99X15-1C 99X60-2C AGS 2000 AP 700 CL AP Legacy ARS14142 ARS15144 ARS960277L ARS970042-1C ARS970071-3C ARS970075-3C ARS970161-3L ARS970163-4C ARS970170-2L ARS970184-1C ARS97230-6C ARS980495-2L ARS98356-2C B980696 BAUERMEISTER Bitterroot Boundary BREVOR BRUEHL BRUNDAGE 96 BRUNEAU BUCHANAN CARA CASHUP CDC Kestrel Centurk78 Chukar CODA CodaxBrundage RIL entry 13 CodaxBrundage RIL entry 20 CodaxBrundage RIL entry 27 CodaxBrundage RIL entry 39 CodaxBrundage RIL entry 4 CodaxBrundage RIL entry 46 CodaxBrundage RIL entry 55 CodaxBrundage RIL entry 63 CodaxBrundage RIL entry 77 CodaxBrundage RIL entry 95 DAWS DUP1Tres EDDY Edwin Elgin SJ Eltan ESTICA Farnum FIDEL Finch FinchxEltan RIL entry 10 FinchxEltan RIL entry 100 FinchxEltan RIL entry 111 FinchxEltan RIL entry 112 FinchxEltan RIL entry 127 FinchxEltan RIL entry 143 FinchxEltan RIL entry 151 FinchxEltan RIL entry 167 FinchxEltan RIL entry 23 FinchxEltan RIL entry 3 FinchxEltan RIL entry 37 FinchxEltan RIL entry 39 FinchxEltan RIL entry 4 FinchxEltan RIL entry 42 FinchxEltan RIL entry 50 FinchxEltan RIL entry 62 FinchxEltan RIL entry 77 FinchxEltan RIL entry 87 FinchxEltan RIL entry 98 FINLEY Foote GAINES GARLAND Gene GEORGE Goetze GOLDEN SPIKE HATTON HILL 81 Hiller HS00120 HS00125 HS00131 HS00135 HS00146 HS00162-12L-2 HS00162-17L-5 HS00162-1L-5 HS00162-20L-4 HS00162-21L-6 HS00162-23L-4 HS00162-6L-4 HS00163-4L-1 HS00165 HS00166 HS00167 HS00168 HS00169 HS00170 HS00171 HS00172 HS00173 HS00176 HS00177 HS00179 HS00181 HS00182 HS00183 HS980165-1L HS98139-2L-2 HS98152-2L-2 HS98175-3L-2 Hubbard HYAK ID00-10701A ID00-475-2DH ID01-11205A ID01-11604A ID01-11803A ID01-19904A ID01-30105A ID01-49201B ID0663 ID96-16702A ID98-15306A ID98-19010A ID98-19502A ID99-06202A ID99-22501A Jagger Karl KKHR05001-0-0-0-112 KKHR05001-0-0-0-27 KKHR05001-0-0-0-45 KKHR05001-0-0-0-62 KKHR05001-0-0-0-63 KKHR05001-0-0-0-66 KKHR05001-0-0-0-91 KKHR05001-0-0-0-95 Lambert LEGION LEWJAIN LUKE MADSEN MASAMI MDM NORSTAR NORWEST553 NUGAINES OMAR OR2030411 OR2040726 OR2050905 OR2050910 OR2052046H OR2060395 OR2060541 OR2060835 OR2070011 OR2070349 OR2070385 OR2070453 OR2070608 OR2070870 OR2070923 OR2071029 OR2071071 OR2071543 OR2071628 OR2071681 OR2071695 OR2071725 OR9800924 OR9900553 OR9901619 ORCF-101 ORCF-101R ORCF-102 ORCF-103 ORFW5 ORSS-1757 PAHA Paladin R JAMES RCL1 RCL10 RCL2 RCL3 RCL4 RCL5 RCL6 RCL7 RCL8 RCL9 ROD Salute SEL101 SIMON SSD060015 SSD060040 SSD060043 SSD060061 SSD060100 SSD060140 SSD060147 SSD060156 SSD060204 SSD060252 SSD060256 SSD060295 SSD060298 SSD060316 SSD060387 SSD060414 SSD060426 SSD060433 SSD060435 SSD060443 SSD060493 SSD060499 SSD060530 SSD060535 SSD060537 SSD060546 SSD060550 SSD060683 SSD060702 SSD060763 STEPHENS Tiber TRES Tubbs TYEE UI DARWIN UI GRACE UI SILVER VW-16 VW-18 VW-23 VW-51 WA 7811 SJ WA 7917 SJ WA 7965 SJ WA007970 WA007971 WA008022 WA008063 WA008064 WA008065 WA008066 WA008068 WA008070 WA008092 WA008093 WA008094 WA008095 WA008096 WA008097 WA008116 WA008117 WA008118 WA008119 WA008120 WA008121 WB 1020M WB 1066M WB 1070M WB 456 WB 523 WB 528 Weatherford Whetstone X000175-18-2 X00219-5C X00223-2C X00248-1C X00254-4C X00262-1C X00270-6L X00277-1L X00289-2L X00290-4L X00295-12C X00303-1C X010701-1C X010702-2L X010703-2L X010704-1L X010705-2C X010706-3L X010708-2L X010710-5L X010712-1L X010713-1L X010715-2C X010719-1L X010720-1L X010721-1L X010723-2L X010724-1L X010725-1L X010726-1L X010727-1L X010728-1L X010729-1L X010730-1L X010731-1L X010732-1C X010733-3L X010734-1L X010736-1L X010738-4L X010741-1C X010742-1C X010743-1C X010744-3C X010745-2C X010746-1C X010747-1C X010749-1C X010750-1C X010754-6C X010761-5C X010762-2C X010765-1C X010766-1C X010767-2C X010768-4C X010769-3C X010774-2C X010779-3C X010780-1L X010781-1L X010782-3C X010783-2C X010787-1C X010790-2C X010795-1L X010799-2L X010802-3L X010807-2L X010809-1C X010811-1C X010812-1L X010814-1L X010815-1L X010816-1L X010817-2L X010819-1C X010820-2C X010822-3L X010824-4C X010826-6L X010829-2L X010830-2C X970161-2L X970167-1-L X980336-5L X980421-1C X980434-1L X980437-3L X980451-4C X990070-C X990072-2C X990077-1C X990085-1C X990121-1C X99341-2C XERPHA
Map Data	Wheat, Yr Update, 2021
QTL	Qyr.wpg-1B.1 [ Show all 45 ]

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