Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Reference Report: GGG-6-2237

[Submit comment/correction]

Reference	GGG-6-2237
Title	Genetic architecture of resistance to stripe rust in a global winter wheat germplasm collection.
Journal	G3: Genes, Genomes, Genetics
Year	2016
Volume	6
Pages	2237-2253
Author	Bulli P Zhang J Chao S Chen X Pumphrey M
Abstract	Virulence shifts in populations of Puccinia striiformis f. sp. tritici (Pst), the causal pathogen of wheat stripe rust, are a major challenge to resistance breeding. The majority of known resistance genes are already ineffective against current races of Pst, necessitating the identification and introgression of new sources of resistance. Germplasm core collections that reflect the range of genetic and phenotypic diversity of crop species are ideal platforms for examining the genetic architecture of complex traits such as resistance to stripe rust. We report the results of genetic characterization and genome-wide association analysis (GWAS) for resistance to stripe rust in a core subset of 1175 accessions in the National Small Grains Collection (NSGC) winter wheat germplasm collection, based on genotyping with the wheat 9K single nucleotide polymorphism (SNP) iSelect assay and phenotyping of seedling and adult plants under natural disease epidemics in four environments. High correlations among the field data translated into high heritability values within and across locations. Population structure was evident when accessions were grouped by stripe rust reaction. GWAS identified 127 resistance loci that were effective across at least two environments, including 20 with significant genome-wide adjusted P-values. Based on relative map positions of previously reported genes and QTL, five of the QTL with significant genome-wide adjusted P-values in this study represent potentially new loci. This study provides an overview of the diversity of Pst resistance in the NSGC winter wheat germplasm core collection, which can be exploited for diversification of stripe rust resistance in breeding programs.
External Databases	https://doi.org/10.1534/g3.116.028407
Germplasm	[ Hide all but 1 of 1175 ] CItr10090 CItr10100 CItr11731 CItr11849 CItr11984 CItr12523 CItr13019 CItr13225 CItr13870 CItr14011 CItr15069 CItr15225 CItr15226 CItr15942 CItr15985 CItr16003 CItr16032 CItr16058 CItr16198 CItr16205 CItr16268 CItr16273 CItr16323 CItr16338 CItr16343 CItr16414 CItr16444 CItr16546 CItr16592 CItr16595 CItr16630 CItr16642 CItr16762 CItr16939 CItr17003 CItr17064 CItr17075 CItr17104 CItr17109 CItr17128 CItr17330 CItr17529 CItr17561 CItr17774 CItr6698 PI180610 PI185313 PI191007 PI192311 PI192417 PI198267 PI213679 PI221343 PI238406 PI272468 PI272490 PI285752 PI286526 PI292997 PI292998 PI304098 PI316428 PI323411 PI351313 PI351338 PI351342 PI351394 PI351461 PI351506 PI351526 PI351669 PI351983 PI352095 PI361953 PI362015 PI367244 PI376466 PI376469 PI376473 PI376478 PI376489 PI405716 PI415185 PI415187 PI415191 PI415193 PI415194 PI415195 PI415196 PI415197 PI434671 PI476784 PI486211 PI518869 PI518871 PI518885 PI519090 PI519092 PI519098 PI519099 PI519132 PI519185 PI519222 PI519235 PI520594 PI542450 PI548139 PI559524 PI559527 PI559533 PI559535 PI559536 PI559548 PI559552 PI564287 PI564290 PI564325 PI564349 PI564351 PI564353 PI564354 PI564357 PI564363 PI564376 PI564401 PI564411 PI565314 PI572970 PI574182 PI574315 PI574316 PI574321 PI574324 PI574330 PI578040 PI583786 PI592439 PI592441 PI592445 PI592458 PI592481 PI592482 PI592484 PI592494 PI593646 PI595379 PI596273 PI598319 PI608032 PI620650 PI620671 PI620675 PI620677 PI620680 PI620682 PI620691 PI620694 PI620732 PI620742 PI620749 PI620751 PI631091 PI631094 PI631105 PI631403 PI633777 PI633885 PI633900 PI633901 PI636141 PI636142 PI638643 PI638644 PI639107 CItr11346 CItr11366 CItr11370 CItr11605 CItr11858 CItr11862 CItr12569 CItr13132 CItr13256 CItr13701 CItr14156 CItr14561 CItr15181 CItr15192 CItr15195 CItr15203 CItr15267 CItr17421 CItr6316 CItr6471 CItr8606 PI125676 PI152259 PI152260 PI157567 PI157575 PI157577 PI157606 PI157608 PI157904 PI161993 PI162002 PI162588 PI162590 PI168711 PI171113 PI174594 PI174629 PI174649 PI174653 PI174681 PI175514 PI180581 PI180588 PI181161 PI181459 PI181464 PI182564 PI182850 PI182851 PI183380 PI183383 PI183386 PI184258 PI184261 PI184855 PI184857 PI190965 PI190985 PI191272 PI191287 PI191303 PI191304 PI191309 PI191335 PI191355 PI191361 PI191423 PI192030 PI192273 PI192347 PI192379 PI192415 PI192416 PI192561 PI192582 PI192701 PI192716 PI193067 PI193068 PI193070 PI193112 PI193124 PI193127 PI195545 PI195546 PI197072 PI197639 PI197640 PI197658 PI197733 PI201130 PI201138 PI209794 PI215628 PI221354 PI221355 PI221384 PI221391 PI221699 PI221700 PI231424 PI231426 PI232946 PI234707 PI235229 PI239087 PI242501 PI242502 PI244858 PI254020 PI254021 PI254037 PI254043 PI254045 PI254046 PI254048 PI254049 PI254052 PI254057 PI254060 PI254061 PI254068 PI254069 PI254070 PI254073 PI254080 PI254834 PI254838 PI254844 PI259889 PI262580 PI262594 PI262596 PI262600 PI262616 PI262634 PI262654 PI262662 PI263562 PI264269 PI264643 PI264644 PI264646 PI265484 PI266142 PI267151 PI268069 PI272351 PI272361 PI272369 PI272384 PI272411 PI272422 PI272426 PI272433 PI274656 PI277111 PI277112 PI278185 PI278186 PI278310 PI278315 PI278326 PI278362 PI278421 PI278422 PI278423 PI278427 PI278431 PI278432 PI278447 PI278451 PI278454 PI278457 PI278458 PI278475 PI278515 PI278517 PI278522 PI278568 PI278590 PI278595 PI282687 PI282905 PI283865 PI283866 PI284531 PI284548 PI284551 PI284654 PI285758 PI285773 PI285775 PI285797 PI285816 PI285827 PI285828 PI285834 PI285846 PI285860 PI285880 PI285896 PI285905 PI285921 PI285934 PI285939 PI285950 PI285953 PI285956 PI285999 PI286017 PI286030 PI286051 PI286524 PI293917 PI293918 PI294570 PI294888 PI294897 PI294901 PI294930 PI294940 PI294956 PI294984 PI294994 PI295002 PI295349 PI298405 PI300950 PI304090 PI304092 PI304095 PI304101 PI304105 PI306510 PI306512 PI306565 PI306566 PI315840 PI315844 PI315845 PI315847 PI315851 PI315963 PI315976 PI315997 PI316001 PI316002 PI316424 PI320489 PI323413 PI323634 PI325530 PI326301 PI330406 PI338357 PI338358 PI338360 PI338387 PI338388 PI338389 PI338390 PI338401 PI338402 PI338403 PI338533 PI339845 PI339857 PI340665 PI340685 PI340690 PI340717 PI340733 PI340737 PI340740 PI340762 PI342604 PI342606 PI342612 PI344545 PI346424 PI351163 PI351172 PI351174 PI351182 PI351201 PI351202 PI351207 PI351217 PI351234 PI351247 PI351268 PI351270 PI351314 PI351326 PI351330 PI351333 PI351341 PI351359 PI351362 PI351397 PI351406 PI351410 PI351417 PI351426 PI351439 PI351463 PI351467 PI351474 PI351509 PI351580 PI351581 PI351620 PI351626 PI351861 PI351952 PI352032 PI352151 PI352152 PI352164 PI352284 PI352290 PI352312 PI352316 PI355733 PI355737 PI361713 PI361720 PI361721 PI361740 PI361742 PI361745 PI361747 PI361749 PI361755 PI361761 PI361783 PI361785 PI361788 PI361806 PI361810 PI361837 PI361845 PI361855 PI361858 PI361980 PI361981 PI361982 PI362177 PI362178 PI362179 PI362180 PI362182 PI362183 PI362184 PI362186 PI362187 PI362189 PI362211 PI367726 PI368010 PI371647 PI372125 PI372129 PI372328 PI372344 PI377635 PI383345 PI383988 PI383993 PI384008 PI392080 PI393973 PI393974 PI393976 PI393980 PI404008 PI410425 PI410428 PI410874 PI410878 PI414568 PI414577 PI414740 PI414741 PI418193 PI418571 PI418574 PI420646 PI422437 PI422512 PI428501 PI428503 PI428512 PI428519 PI428636 PI428638 PI428639 PI428640 PI428641 PI428643 PI428644 PI428648 PI428651 PI428652 PI428657 PI428659 PI428660 PI435095 PI435124 PI446910 PI447043 PI447429 PI476765 PI476787 PI476789 PI476792 PI486146 PI499963 PI499964 PI504549 PI512256 PI518791 PI518814 PI519267 PI52318 PI547263 PI559654 PI564417 PI565178 PI565303 PI565323 PI565356 PI565361 PI565371 PI565396 PI565404 PI565407 PI565419 PI565422 PI565427 PI572619 PI572621 PI572638 PI572642 PI572647 PI572648 PI572653 PI572654 PI573732 PI583669 PI584789 PI584795 PI591854 PI591855 PI591858 PI591965 PI591992 PI592054 PI592114 PI592129 PI592137 PI594372 PI598212 PI599664 PI600835 PI600838 PI605389 PI606247 PI615323 PI628640 PI632399 PI639951 PI639953 PI64109 PI68235 PI68236 PI68265 PI68268 PI68273 CItr14121 PI561886 PI602552 PI602557 PI610473 PI639075 PI639095 CItr11228 CItr11234 CItr15310 CItr17365 CItr17376 CItr17378 CItr9340 CItr9358 CItr9362 PI107302 PI172582 PI173497 PI178184 PI181398 PI184150 PI184161 PI184162 PI184176 PI184196 PI184197 PI184198 PI184208 PI184260 PI190998 PI191014 PI191202 PI191240 PI207123 PI210371 PI210485 PI222650 PI222673 PI225265 PI225275 PI243674 PI243682 PI243777 PI245514 PI262603 PI262605 PI262609 PI262615 PI262653 PI269407 PI272374 PI278196 PI278199 PI278249 PI278289 PI278318 PI278424 PI278491 PI278539 PI278589 PI278609 PI278612 PI278613 PI278614 PI278623 PI278627 PI278635 PI283883 PI308133 PI314558 PI321902 PI337650 PI345159 PI345205 PI345238 PI345244 PI345319 PI345355 PI345356 PI345409 PI345411 PI345417 PI345451 PI345456 PI345468 PI345476 PI347180 PI347188 PI347225 PI347227 PI349926 PI349939 PI349959 PI350046 PI350070 PI350118 PI350148 PI350150 PI350254 PI350256 PI350260 PI350264 PI350267 PI350269 PI350881 PI350885 PI350901 PI350905 PI350910 PI350927 PI350939 PI350953 PI350959 PI350962 PI350972 PI350974 PI351005 PI351010 PI351046 PI351595 PI352226 PI362412 PI362427 PI362443 PI362456 PI362474 PI362480 PI362486 PI362502 PI362515 PI362526 PI362546 PI362574 PI362594 PI362600 PI362612 PI362623 PI362652 PI362674 PI362693 PI367025 PI367078 PI372473 PI374505 PI374510 PI374556 PI374617 PI374665 PI374666 PI374678 PI374680 PI374692 PI378255 PI378276 PI378323 PI378353 PI378355 PI378391 PI378405 PI378412 PI378492 PI378500 PI378519 PI378521 PI378527 PI390330 PI390334 PI390342 PI390347 PI405857 PI405864 PI405893 PI405900 PI406490 PI406530 PI415430 PI420588 PI420600 PI429689 PI436300 PI436435 PI469020 PI470437 PI478071 PI481713 PI481725 PI51688 PI548117 PI548119 PI548134 PI560615 PI565358 PI565381 PI57145 PI57157 PI57164 PI57185 PI572680 PI572683 PI572687 PI572689 PI572691 PI591870 PI591997 PI615367 PI615369 PI615373 PI615375 PI615378 PI615386 PI620902 PI620904 PI620913 PI620919 PI620954 PI620958 PI620994 PI621010 PI621019 PI621021 PI621047 PI621049 PI621069 PI621083 PI621093 PI621103 PI621108 PI621122 PI621143 PI621166 PI621168 PI621178 PI621185 PI621199 PI621205 PI621208 PI621237 PI621243 PI621244 PI621251 PI621253 PI621258 PI621270 PI621310 PI621360 PI621404 PI621405 PI621406 PI621422 PI621434 PI621449 PI621463 PI621465 PI621468 PI621480 PI621484 PI621488 PI621510 PI621544 PI621547 PI621550 PI621606 PI621627 PI621642 PI621645 PI621646 PI621654 PI621655 PI621657 PI621660 PI621661 PI621676 PI621678 PI621710 PI621717 PI621719 PI621720 PI621722 PI621736 PI621800 PI621841 PI621846 PI621874 PI621887 PI621900 PI621933 PI621939 PI621959 PI621979 PI621980 PI621981 PI621987 PI621994 PI622004 PI622008 PI622021 PI622039 PI622041 PI622054 PI622055 PI622062 PI622065 PI622252 PI622274 PI622289 PI622294 PI622297 PI622298 PI622315 PI622329 PI622346 PI622347 PI622350 PI622364 PI622409 PI622513 PI622544 PI622552 PI622553 PI622558 PI622562 PI622566 PI622568 PI622572 PI622584 PI622586 PI622589 PI622591 PI622603 PI622609 PI622624 PI622630 PI622644 PI622645 PI622701 PI622719 PI622722 PI622729 PI622731 PI622736 PI622738 PI622780 PI622789 PI622801 PI622803 PI622805 PI622832 PI622878 PI622884 PI622886 PI622894 PI622919 PI622921 PI622926 PI622929 PI622949 PI622962 PI622963 PI622972 PI622981 PI623005 PI623020 PI623036 PI623048 PI623051 PI62368 PI625333 PI625352 PI626367 PI626697 PI626703 PI626716 PI626732 PI626742 PI626784 PI626785 PI626830 PI626842 PI626847 PI626861 PI626951 PI626956 PI626964 PI626967 PI626988 PI627023 PI627037 PI627041 PI627051 PI627064 PI627071 PI627093 PI627122 PI627137 PI627169 PI627178 PI627189 PI627196 PI627199 PI627206 PI627226 PI627236 PI627303 PI627322 PI627333 PI627359 PI627372 PI627373 PI627377 PI627406 PI627421 PI627435 PI627456 PI627468 PI627480 PI627482 PI627495 PI627498 PI627523 PI627593 PI627605 PI627620 PI627624 PI627629 PI627649 PI627660 PI627662 PI627688 PI627723 PI627729 PI627732 PI627738 PI627739 PI627746 PI627748 PI627750 PI627757 PI627770 PI627780 PI627781 PI627798 PI627801 PI627814 PI627817 PI627827 PI627860 PI627861 PI627877 PI627888 PI627923 PI627958 PI627963 PI627971 PI627998 PI628005 PI628006 PI628016 PI628024 PI628031 PI628038 PI628040 PI628065 PI628092 PI628117 PI628118 PI628142 PI628146 PI628147 PI628161 PI628163 PI628166 PI628189 PI628196 PI628206 PI628233 PI628234 PI65564 PI73322 PI73338 PI73362 PI74298 PI74305 PI74346 PI74752 PI82846 PI82880 PI82908 PI82912 PI83107 PI83248 PI83251 PI83436 PI83515 PI84527 PI86209 PI87115 PI87116 PI87117 PI87987 PI94344 PI94345 PI94356 PI94373 PI94374 PI94375 PI94442 PI94450 PI94454 PI94457 PI94464 PI94468 PI94479 PI94481 PI94484 PI94489 PI94499 PI94505 PI94510 PI94514
Map Data	Wheat, Yr Update, 2021
QTL	QYr.wsu-1A.1 [ Show all 23 ]

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.