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GrainGenes Reference Report: TAG-127-1561

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Reference	TAG-127-1561
Title	A consensus map for Ug99 stem rust resistance loci in wheat.
Journal	Theoretical and Applied Genetics
Year	2014
Volume	127
Pages	1561-1581
Author	Yu L [ Show all 8 ]
Abstract	This consensus map of stem rust genes, QTLs, and molecular markers will facilitate the identification of new resistance genes and provide a resource of in formation for development of new markers for breeding wheat varieties resistant to Ug99. The global effort to identify new sources of resistance to wheat stem rust, caused by Puccinia graminis f. sp. tritici race group Ug99 has resulted in numerous studies reporting both qualitative genes and quantitative trait loci. The purpose of our study was to assemble all available information on loci associated with stem rust resistance from 21 recent studies on Triticum aestivum L. (bread wheat) and Triticum turgidum subsp. durum desf. (durum wheat). The software LPmerge was used to construct a stem rust resistance loci consensus wheat map with 1,433 markers incorporating Single Nucleotide Polymorphism, Diversity Arrays Technology, Genotyping-by-Sequencing as well as Simple Sequence Repeat marker information. Most of the markers associated with stem rust resistance have been identified in more than one population. Several loci identified in these populations map to the same regions with known Sr genes including Sr2, SrND643, Sr25 and Sr57 (Lr34 Yr18/Pm38), while other significant markers were located in chromosome regions where no Sr genes have been previously reported. This consensus map provides a comprehensive source of information on 141 stem rust resistance loci conferring resistance to stem rust Ug99 as well as linked markers for use in marker-assisted selection.
External Databases	http://dx.doi.org/doi:10.1007/s00122-014-2326-7
Gene	Sr1RS^Amigo^ (Triticum) [ Show all 43 ]
Germplasm	Arina (P11) [ Show all 36 ]
Locus	Sr1RS^Amigo^ [ Show all 44 ]
Map Data	Wheat_Consensus_2014_Ug99_Rust Wheat-2014-Consensus-Ug99-Update
Probe	[ Hide all but 1 of 867 ] BS00024039 wPt-730213 wPt-8770 wPt-1167 wPt-2527 wPt-8644 wPt-0164 wPt-2406 wPt-5274 wPt-4709 wPt-2976 wPt-6005 w117500 wPt-5577 wPt-0512 SNPPMOp104580/35 SNPPMOp1141478/22 Glu-A3 wPt-9752 PAPMOp245483 SNPPMOp1717516/29 wPt-732946 SNPPMOp1097398/77 wPt-9757 BS00070435 SyOpL1046 BS00003863 wPt-0128 wPt-5316 wPt-4658 wPt-7872 wPt-2311 wPt-9266 wPt-0527 wPt-3698 wPt-8105 wPt-6654 wPt-7030 wPt-8347 wPt-9592 Glu-A1 SNPPMOp1691201/39 cfa2129 wPt-734040 wPt-2251 wPt-7820 wPt-2436 wPt-0827 wPt-6869 wPt-3439 wPt-8984 Gli-A1 wPt-1560 wPt-8949 Rg-1B wPt-3477 wPt-8930 SNPPMOp1154177/43 wPt-2052 wPt-3824 BS00010592 BS00024046 wPt-3465 SNPPMOp1013628/57 SyOpL18 SNPPMOp1518985/3 wPt-1589 wPt-4735 wPt-4236 SNPPMOp1024350/41 BS00003831 BS00022294 BS00022973 wPt-1139 wPt-5801 SNPPMOp101778/26 wPt-5562 SNPPMOp1060526/8 wPt-2019 wPt-2230 wPt-8627 BS00022135 wPt-8240 SNPPMOp871728/89 SNPPMOp967089/30 wPt-5678 wPt-6833 wPt-6117 wPt-1684 wPt-0260 wPt-3451 wPt-0459 Glu-B1 BS00094555 SNPPMOp900880/59 ncw1 SyOpL524 wPt-9612 wPt-9032 wPt-1403 wPt-4129 wPt-3475 wPt-0944 wPt-2526 wPt-4532 wPt-1770 wPt-1313 wPt-4497 wPt-4721 wPt-6142 wPt-4651 BS00009709 Lr21 SNPPMOp931433/37 BS00028928 cdf21 SNPPMOp123974/65 wPt-4647 wPt-9181 SNPPMOp1193489/2 bac119 wPt-8960 BS00103876 SNPPMOp1481895/60 wPt-7140 rPt-4471 wPt-5320 wPt-413 BS00102902 wPt3743 BS00031152 wPt-3743 SyOpL1660 wPt-6059 wPt-10060 BS00023957 BS00099705 wPt-6560 wPt-733012 wPt-1657 wPt-5887 wPt-6687 BS00022777 wPt-7739 wPt-5647 wPt-9951 wPt-6361 wPt-4094 wPt-3114 wPt-740658 SyOpL2634 wPt-2544 SyOpL797 SNPPMOp167763/46 wPt-4861 wPt-5865 SyOpL1412 wPt-7056 wPt-4201 wPt-5251 wPt-7024 wPt-7011 BS00022002 BS00009989 BS00090594 wPt-5960 wPt-6627 wPt-6805 BS00095004 wPt-0100 wPt-4916 wPt-6575 wPt-0643 wPt-3459 wPt-5934 wPt-5195 wPt-3388 wPt-9230 wPt-744022 wPt-5374 SyOpL2770_NBS SyOpL98 wPt-6199 BS00110268 wPt-5556 wPt-7757 wPt-5672 wPt-4125 wPt-8235 wPt-4453 wPt-2106 SyOpL1740 wPt-5707 SNPPMOp1059844/18 SyOpL1100 SyOpL390 wPt-9402 SNPPMOp150859/8 wPt-3561 wPt-8398 wPt-8326 wPt-8004 wPt-8404 wPt-0462 wPt-9423 wPt-8072 BS00064156 wPt-4301 BS00066626 wPt-743630 SyOpL2669 BS00010688 wPt-2600 wPt-8583 SyOpL2392 BS00026412 BS00073842 wPt-7750 SyOpL161 SyOpL1333 SNPPMOp102229/37 wPt-5878 SyOpL2163 SyOpL1007 wPt-0335 wPt0335 BS00004433 wPt-8460 wPt-0408 wPt-6477 BS00022091 BS00074789 BS00009461 wPt-3132 wPt-7200 wPt-1964 tPt-4125 wPt-0694 SNPPMOp1529541/32 wPt-0697 wPt-3383 wPt-799851 wPt-5128 wPt-7004 wPt-7161 wPt-2108 wPt-2397 wPt-4892 BS00009460 wPt-2274 wPt-3436 SyOpL2571 SNPPMOp149247/49 SNPPMOp29337/83 wPt-10835 wPt-2960 cfd51 BS00010492 SNPPMOp113570/43 Ppd1 BS00016116 wPt-4242 BS00011752 wPt-1499 wPt-0476 wPt-5281 BS00000628 wPt-5133 wPt-2748 wPt-8855 wPt-7341 wPt-7217 wPt-3041 wPt-8649 wPt-9369 wPt-7992 wPt-6854 wPt-1665 SyOpL1556 wPt-9154 SyOpL1089 wPt-9049 SyOpL2293 SyOpL31 wPt-4725 SyOpL424 wPt-4065 wPt-732616 BS00022092 BS00072145 wPt-3612 BS00032912 Sr2 SNPPMOp3560048/58 SNPPMOp964081/7 wPt-8446 SNPPMOp1089320/3 SNPPMOp1348570/58 wPt-8093 wPt-742337 wPt-6043 BS00064778 wPt-3921 wPt-3761 wPt-3609 BS00009476 SNPPMOp10286/28 SyOpL2053 BS00011373 wPt-666139 SyOpL1542 wPt-1081 BS00022190 wPt-742648 SyOpL1730 wPt-2757 wPt-800213 wPt-7212 BS00011966 SyOpL2273 SyOpL2396 SyOpL305 SyOpL1361 wPt-8238 BS00070826 BS00022048 SyOpL2303 BS00009513 wPt-6802 BS00010060 SyOpL2675 SyOpL1057 wPt-371 SNPPMOp6664/59 BS00003864 wPt-7486 wPt-9510 wPt-6239 wPt-6973 wPt-1159 wPt-4209 SNPPMOp1295258/65 SNPPMOp1750525/83 SNPPMOp400706/77 PAPMOp96539 wPt-5105 BS00060014 wPt-7015 wPt-9170 wPt-6945 SyOpL1845 wPt-9432 SyOpL1930 SyOpL759 BS00015099 wPt-6047 Sr12 wPt-5580 wPt-5946 SyOpL858 wPt-5390 wPt-0751 BS00094271 wPt-9433 wPt-5716 wPt-7229 wPt-2220 BS00000978 wPt-0544 wPt-0446 SNPPMOp1095216/14 PAPMM6398764 wPt-3327 wPt-1940 SyOpL2017 wPt-7502 wPt-10003 wPt-4082 BS00059417 SyOpL1217 wPt-1171 SyOpL2617 wPt-9912 wPt-8056 wPt-5769 wPt-5906 wPt-8096 wPt-3107 wPt-1804 SyOpL2491 SNPPMOp1526933/1 wPt-2439 SyOpL2194 SyOpL645 wPt-4412 wPt-1311 wPt-4370 wPt-0365 wPt-0995 wPt-8352 SNPPMOp561314/18 BS00000447 wPt-6909 wPt-5313 BS00010258 wPt-9401 wPt-1741 wPt-3815 wPt-1336 wPt-6358 wPt-4476 wPt-2013 wPt-8463 w117472 cfd62 BS00098058 cfd120 BS00037276 wPt-6262 cdf9 BS00098495 wPt-1440 SNPPMOp1108885/33 wPt-10668 wPt-9525 wPt-7524 BS00011378 wPt-2788 SNPPMOp1043912/75 wPt-9057 wPt-5694 wPt-0117 wPt-7939 wPt-0817 wPt-7924 BS00022213 wPt-7001 wPt-8078 BS00011939 BS00022837 BS00018651 BS00023220 wPt-1091 SNPPMOp10698/14 PAPMM6100799 wPt-6997 wPt-5857 wPt-9196 wPt-1743 wPt-5124 SyOpL2079 BS00106888 wPt-5749 wPt-3349 SyOpL2131 wPt-3795 wPt-7807 wPt-2084 SNPPMOp37313/61 wPt-1362 wPt-7821 wPt-2319 wPt-9884 wPt-5212 wPt-1961 wPt-5172 wPt-0610 wPt-2951 wPt-4680 wPt-0150 wPt-3491 SyOpL311 SNPPMOp1112908/84 SNPPMOp241208/61 SyOpL544 wPt-5434 wPt-4487 wPt-6390 wPt-3402 BS00022846 wPt-5559 wPt-8756 SyOpL2051 wPt-9192 wPt-1046 wPt-8650 SyOpL1859 SyOpL1441 wPt-3015 wPt-6149 SyOpL189 wPt-1708 wPt-3991 wPt-5334 SNPPMM6863970/69 tPt-0602 tPt-602 BS00009774 SNPPMOp1023737/43 wPt-5303 SyOpL1920 BS00014075 BS00073758 BS00083036 BS00022793 wPt-1115 BS00010015 wPt-5184 rht-4D SNPPMOp157615/40 wPt-0648 wPt-4572 wPt-648 wPt-0941 wPt-3178 wPt-2379 cfd71 wPt-5809 wPt-3058 BS00022113 BS00023943 SNPPMOp1138764/28 wPt-7878 SNPPMOp1293165/14 BS00023934 SNPPMOp1286622/25 wPt-1412 BS00011278 wPt-10161 wPt-9748 BS00089357 BS00011116 BS00087453 BS00011537 cos5F wPt-3563 wPt-3334 wPt-1903 wPt-5231 SyOpL2731 wPt-9887 SNPPMOp1978/35 PAPMOp105221 B1-5A SNPPMOp717499/31 PAPMOp576041 wPt-4131 SNPPMOp314722/69 wPt-4249 PAPMOp1059158 wPt-2768 wPt-6048 SyOpL643 wPt-6990 gmw304 wPt-8794 SNPPMOp1096021/17 SNPPMOp115775/59 wPt-5096 SyOpL778 wPt-733461 wPt-5142 BS00009264 wPt-1302 SyOpL283 SyOpL250 wPt-8406 wPt-3873 wPt-1149 wPt-5346 SNPPMOp185131/43 wPt-2586 SNPPMOp201244/17 wPt-4996 SNPPMOp130896/16 SNPPMOp445009/5 BS00003876 PAPMM6100537 wPt-2607 BS00011386 wPt-1250 wPt-3457 SNPPMOp1472/52 wPt-9356 BS00010952 SyOpL2437 wPt-3661 SNPPMOp332417/44 BS00009414 SNPPMOp468860/33 wPt-1733 SyOpL1005 wPt-5896 wPt-6014 wPt-3030 wPt-0750 BS00022963 SNPPMOp1640210/20 SyOpL1960 SNPPMOp558187/29 rPt-3114 wPt-9598 wPt-1482 wPt-9103 wPt-0935 wPt-9205 wPt-8094 wPt-4418 wPt-0927 wPt-9815 wPt-3922 wPt-9116 wPt-7665 wPt-2373 wPt-0484 wPt-0837 wPt-9894 wPt-4898 wPt-9027 wPt-5032 cfd18 Pina Pinb wPt-6225 BS00041838 SrHD BS00022228 SNPPMOp1519638/55 BS00011125 PAPMM6137386 wPt-1664 wPt-9382 wPt-0832 wPt-7475 wPt-1377 wPt-669498 wPt-7623 wPt-6520 SNPPMOp10333/21 wPt-4016 wPt-8266 wPt-2573 wPt7127 wPt-9690 wPt-0959 wPt-7599 wPt-0357 wPt-8833 wPt-3091 wPt-7373 wPt-5601 wPt-8662 wPt-5310 wPt-6696 BS00003339 wPt-4229 wPt-9474 wPt-1661 wPt-1642 wPt-9976 wPt-4445 wPt-7204 wPt-1695 wPt-8124 wPt-6268 wPt-2175 wPt-7745 wPt-8721 wPt-3774 wPt-7662 BS00003785 BS00003792 wPt-3376 wPt-4930 wPt-9532 wPt-7777 wPt-3581 wPt-6994 wPt-4720 wPt-4283 wPt-7150 wPt-5234 wPt-2689 wPt-0245 wPt-1852 wPt-3304 wPt-7207 wPt-8239 wPt-4924 wPt-1922 wPt-3130 wPt-9990 wPt-4386 wPt-8015 wPt-3060 wPt-4648 wPt-5596 BS00010415 wPt-5333 BS00022668 wPt-3733 wPt-2964 wPt-7636 wPt-5461 wPt-4164 wPt-9952 wPt-6116 wPt-3045 wPt-1264 wPt-8268 wPt-5037 BS00023187 wPt-6023 wPt-5480 BS00011458 wPt-0171 wPt-1541 BS00010618 wPt-9256 BS00023066 wPt-732061 SNPPMM61159750/20 PAPMM6106536 SyOpL281 SyOpL2232 SyOpL362 SyOpL1457 SyOpL1451 SyOpL1919 wPt-3424 SNPPMOp1239709/60 SNPPMOp157697/36 SyOpL1247 SyOpL14 SNPPMOp1227776/50 SNPPMOp103652/20 SyOpL1051 SNPPMOp261873/83 SNPPMOp3332865/80 SNPPMOp372691/21 SyOpL1225 SyOpL740 SyOpL313 PAPMOp86183 wPt-9651 wPt-0433 BS00022082 wPt-672171 wPt-8043 wPt-2371 wPt-9207 wPt-7448 wPt-1639 wPt-6668 SNPPMOp1069993/13 wPt-4748 wPt742244 SNPPMOp410647/16 SyOpL1199 wPt-6013 wPt-5558 wPt-4553 wPt-0961 BS00013872 wPt-5257 wPt-9796 wPt-3883 wPt-7186 BS00002556 wPt8418 wPt-744715 SNPPMOp2675910/36 wPt-4515 SyOpL2262 BS00021771 BS00000847 SyOpL2323 BS00078174 SyOpL2300 SyOpL896 SyOpL2086 wPt-8670 SyOpL1907 SyOpL1876 wPt-741686 wPt-6495 BS00022560 wPt-7763 BS00073988 wPt-8846 BS00081108 wPt-7318 wPt-7653 gpw4444 wPt-4863 wPt-0963 wPt-4230 wPt-7934 wPt-6498 wPt-2572 wPt-6372 wPt-2305 wPt0312 wPt-3730 wPt-4025 BS00011069 wPt-2994 wPt-2273 wPt-7351 BS00065735 wPt-1826 wPt-3723 wPt-9925 SNPPMM6777963/4 wPt-8007 wPt-0600 SyOpL143 wPt-3190 wPt-4258 SyOpL1352 SNPPMOp402574/42 wPt-5343 BS00010251 SNPPMOp108828/50 SyOpL1351 wPt-0194 BS00074359 wPt-2356 wPt-4300 BS00009464 wPt-5462 BS00010142 wPt-9488 cfa2040 wPt-2565 wPt-665260 wPt-8798 SNPPMOp1043882/16 Sr57 w117337 wPt-1100 wPt-3328 wPt-7171 SNPPMOp101458/70 wPt-789 csLV34 SNPPMOp1034549/16 cssfr5 wPt-9822 wPt-2258 SNPPMM62481791/38 SyOpL1368 wPt-731810 wPt-7642 cfd66 BS00022511 BS00012122 BS00023184 BS00024032 BS00024103 BS00011639 wPt-2054 wPt-1859 wPt-6716 wPt-3923 wPt-5674 wPt-664017

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