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GrainGenes Probe Report: TraesCS5D01G565400

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	TraesCS5D01G565400
Locus	TraesCS5D01G565400.2
URL	[ Hide all but 1 of 22 ] Pfam PF03731 Pfam PF02735 Pfam PF03730 Pfam PF08785 InterPro IPR002035 InterPro IPR005160 InterPro IPR005161 InterPro IPR006164 InterPro IPR014893 InterPro IPR016194 InterPro IPR024193 Gene Ontology GO:0000723 Gene Ontology GO:0003677 Gene Ontology GO:0003684 Gene Ontology GO:0004003 Gene Ontology GO:0005634 Gene Ontology GO:0006303 Gene Ontology GO:0006310 Gene Ontology GO:0016817 Gene Ontology GO:0042162 Gene Ontology GO:0043564 Gene expression at wheat-expression.com (expVIP)
Reference	IWGSC et al. (2018) Shifting the limits in wheat research and breeding using a fully annotated reference genome Science 361.
General Remarks	BLAST Hit Accession: tr|M8BCP1|M8BCP1_AEGTA Human Readable Description: ATP-dependent DNA helicase 2 subunit ku80 Pfam IDs Description: PF03731: Ku70/Ku80 N-terminal alpha/beta domain; PF02735: Ku70/Ku80 beta-barrel domain; PF03730: Ku70/Ku80 C-terminal arm; PF08785: Ku C terminal domain like InterPro IDs Description: IPR002035: von Willebrand factor, type A; IPR005160: Ku70/Ku80 C-terminal arm; IPR005161: Ku70/Ku80, N-terminal alpha/beta; IPR006164: Ku70/Ku80 beta-barrel domain; IPR014893: Ku, C-terminal; IPR016194: SPOC-like, C-terminal domain; IPR024193: Ku80 GO IDs Description via InterPro: GO:0000723 BP: telomere maintenance; GO:0003677 MF: DNA binding; GO:0003684 MF: damaged DNA binding; GO:0004003 MF: ATP-dependent DNA helicase activity; GO:0005634 CC: nucleus; GO:0006303 BP: double-strand break repair via nonhomologous end joining; GO:0006310 BP: DNA recombination; GO:0016817 MF: hydrolase activity, acting on acid anhydrides; GO:0042162 MF: telomeric DNA binding; GO:0043564 CC: Ku70:Ku80 complex
Type	Genomic
Sequence	TraesCS5D01G565400.1 TraesCS5D01G565400.2
Source Species	Triticum aestivum
Source Germplasm	Chinese Spring