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GrainGenes Probe Report: TraesCS5A01G189600

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	TraesCS5A01G189600
Locus	TraesCS5A01G189600.1
URL	[ Hide all but 1 of 24 ] Pfam PF08082 Pfam PF08083 Pfam PF10598 Pfam PF10597 Pfam PF10596 Pfam PF12134 Pfam PF01398 Pfam PF08084 InterPro IPR000555 InterPro IPR012337 InterPro IPR012591 InterPro IPR012592 InterPro IPR012984 InterPro IPR019580 InterPro IPR019581 InterPro IPR019582 InterPro IPR021983 Gene Ontology GO:0000398 Gene Ontology GO:0003676 Gene Ontology GO:0003723 Gene Ontology GO:0005515 Gene Ontology GO:0017070 Gene Ontology GO:0030623 Gene expression at wheat-expression.com (expVIP)
Reference	IWGSC et al. (2018) Shifting the limits in wheat research and breeding using a fully annotated reference genome Science 361.
General Remarks	BLAST Hit Accession: tr|M7ZX76|M7ZX76_TRIUA Human Readable Description: Pre-mRNA-processing-splicing factor 8 Pfam IDs Description: PF08082: PRO8NT (NUC069), PrP8 N-terminal domain; PF08083: PROCN (NUC071) domain; PF10598: RNA recognition motif of the spliceosomal PrP8; PF10597: U5-snRNA binding site 2 of PrP8; PF10596: U6-snRNA interacting domain of PrP8; PF12134: PRP8 domain IV core; PF01398: JAB1/Mov34/MPN/PAD-1 ubiquitin protease; PF08084: PROCT (NUC072) domain InterPro IDs Description: IPR000555: JAB1/MPN/MOV34 metalloenzyme domain; IPR012337: Ribonuclease H-like domain; IPR012591: PRO8NT domain; IPR012592: PROCN domain; IPR012984: PROCT domain; IPR019580: Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding; IPR019581: Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding; IPR019582: RNA recognition motif, spliceosomal PrP8; IPR021983: PRP8 domain IV core GO IDs Description via InterPro: GO:0000398 BP: mRNA splicing, via spliceosome; GO:0003676 MF: nucleic acid binding; GO:0003723 MF: RNA binding; GO:0005515 MF: protein binding; GO:0017070 MF: U6 snRNA binding; GO:0030623 MF: U5 snRNA binding
Type	Genomics
Sequence	TraesCS5A01G189600.1
Source Species	Triticum aestivum
Source Germplasm	Chinese Spring