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GrainGenes Probe Report: TraesCS5A01G093600

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	TraesCS5A01G093600
Locus	TraesCS5A01G093600.1
URL	[ Hide all but 1 of 22 ] Pfam PF08414 Pfam PF13405 Pfam PF01794 Pfam PF08022 Pfam PF08030 InterPro IPR000778 InterPro IPR002048 InterPro IPR011992 InterPro IPR013112 InterPro IPR013121 InterPro IPR013130 InterPro IPR013623 InterPro IPR017927 InterPro IPR017938 InterPro IPR018247 Gene Ontology GO:0004601 Gene Ontology GO:0005509 Gene Ontology GO:0016020 Gene Ontology GO:0016491 Gene Ontology GO:0050664 Gene Ontology GO:0055114 Gene expression at wheat-expression.com (expVIP)
Reference	IWGSC et al. (2018) Shifting the limits in wheat research and breeding using a fully annotated reference genome Science 361.
General Remarks	BLAST Hit Accession: tr|H2KWW9|H2KWW9_ORYSJ Human Readable Description: Respiratory burst oxidase, putative, expressed Pfam IDs Description: PF08414: Respiratory burst NADPH oxidase; PF13405: EF-hand domain; PF01794: Ferric reductase like transmembrane component; PF08022: FAD-binding domain; PF08030: Ferric reductase NAD binding domain InterPro IDs Description: IPR000778: Cytochrome b245, heavy chain; IPR002048: EF-hand domain; IPR011992: EF-hand domain pair; IPR013112: FAD-binding 8; IPR013121: Ferric reductase, NAD binding domain; IPR013130: Ferric reductase transmembrane component-like domain; IPR013623: NADPH oxidase Respiratory burst; IPR017927: Ferredoxin reductase-type FAD-binding domain; IPR017938: Riboflavin synthase-like beta-barrel; IPR018247: EF-Hand 1, calcium-binding site GO IDs Description via InterPro: GO:0004601 MF: peroxidase activity; GO:0005509 MF: calcium ion binding; GO:0016020 CC: membrane; GO:0016491 MF: oxidoreductase activity; GO:0050664 MF: oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor; GO:0055114 BP: oxidation-reduction process
Type	Genomics
Sequence	TraesCS5A01G093600.1 TraesCS5A01G093600.2
Source Species	Triticum aestivum
Source Germplasm	Chinese Spring