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GrainGenes Probe Report: TraesCS4D01G135700

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	TraesCS4D01G135700
Locus	TraesCS4D01G135700.1
URL	[ Hide all but 1 of 21 ] Pfam PF01411 Pfam PF07973 Pfam PF02272 InterPro IPR002318 InterPro IPR003156 InterPro IPR009000 InterPro IPR012947 InterPro IPR018162 InterPro IPR018163 InterPro IPR018164 InterPro IPR018165 InterPro IPR023033 Gene Ontology GO:0000166 Gene Ontology GO:0003676 Gene Ontology GO:0004813 Gene Ontology GO:0005524 Gene Ontology GO:0005737 Gene Ontology GO:0006419 Gene Ontology GO:0016876 Gene Ontology GO:0043039 Gene expression at wheat-expression.com (expVIP)
Reference	IWGSC et al. (2018) Shifting the limits in wheat research and breeding using a fully annotated reference genome Science 361.
General Remarks	BLAST Hit Accession: tr|A0A1D5XQ85|A0A1D5XQ85_WHEAT Human Readable Description: Alanine--tRNA ligase Pfam IDs Description: PF01411: tRNA synthetases class II (A); PF07973: Threonyl and Alanyl tRNA synthetase second additional domain; PF02272: DHHA1 domain InterPro IDs Description: IPR002318: Alanine-tRNA ligase, class IIc; IPR003156: DHHA1 domain; IPR009000: Translation protein, beta-barrel domain; IPR012947: Threonyl/alanyl tRNA synthetase, SAD; IPR018162: Alanine-tRNA ligase, class IIc, anti-codon-binding domain; IPR018163: Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain; IPR018164: Alanyl-tRNA synthetase, class IIc, N-terminal; IPR018165: Alanyl-tRNA synthetase, class IIc, core domain; IPR023033: Alanine-tRNA ligase, eukaryota/bacteria GO IDs Description via InterPro: GO:0000166 MF: nucleotide binding; GO:0003676 MF: nucleic acid binding; GO:0004813 MF: alanine-tRNA ligase activity; GO:0005524 MF: ATP binding; GO:0005737 CC: cytoplasm; GO:0006419 BP: alanyl-tRNA aminoacylation; GO:0016876 MF: ligase activity, forming aminoacyl-tRNA and related compounds; GO:0043039 BP: tRNA aminoacylation
Type	Genomic
Sequence	TraesCS4D01G135700.1
Source Species	Triticum aestivum
Source Germplasm	Chinese Spring