Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Probe Report: TraesCS4D01G081100

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	TraesCS4D01G081100
Locus	TraesCS4D01G081100.1
URL	[ Hide all but 1 of 18 ] Pfam PF02861 Pfam PF00004 Pfam PF02151 Pfam PF07724 Pfam PF10431 InterPro IPR001270 InterPro IPR001943 InterPro IPR003593 InterPro IPR003959 InterPro IPR004176 InterPro IPR018368 InterPro IPR019489 InterPro IPR027417 InterPro IPR028299 Gene Ontology GO:0005515 Gene Ontology GO:0005524 Gene Ontology GO:0019538 Gene expression at wheat-expression.com (expVIP)
Reference	IWGSC et al. (2018) Shifting the limits in wheat research and breeding using a fully annotated reference genome Science 361.
General Remarks	BLAST Hit Accession: tr|A0A072V2V0|A0A072V2V0_MEDTR Human Readable Description: ATP-dependent Clp protease ATP-binding subunit Pfam IDs Description: PF02861: Clp amino terminal domain, pathogenicity island component; PF00004: ATPase family associated with various cellular activities (AAA); PF02151: UvrB/uvrC motif; PF07724: AAA domain (Cdc48 subfamily); PF10431: C-terminal, D2-small domain, of ClpB protein InterPro IDs Description: IPR001270: ClpA/B family; IPR001943: UVR domain; IPR003593: AAA+ ATPase domain; IPR003959: ATPase, AAA-type, core; IPR004176: Clp, N-terminal; IPR018368: ClpA/B, conserved site 1; IPR019489: Clp ATPase, C-terminal; IPR027417: P-loop containing nucleoside triphosphate hydrolase; IPR028299: ClpA/B, conserved site 2 GO IDs Description via InterPro: GO:0005515 MF: protein binding; GO:0005524 MF: ATP binding; GO:0019538 BP: protein metabolic process
Type	Genomic
Sequence	TraesCS4D01G081100.1
Source Species	Triticum aestivum
Source Germplasm	Chinese Spring