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GrainGenes Probe Report: TraesCS4A01G157100

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	TraesCS4A01G157100
Locus	TraesCS4A01G157100.1
URL	[ Hide all but 1 of 18 ] Pfam PF04542 Pfam PF04539 Pfam PF04545 InterPro IPR000943 InterPro IPR007624 InterPro IPR007627 InterPro IPR007630 InterPro IPR011991 InterPro IPR013324 InterPro IPR013325 InterPro IPR014284 InterPro IPR016262 Gene Ontology GO:0003677 Gene Ontology GO:0003700 Gene Ontology GO:0006352 Gene Ontology GO:0006355 Gene Ontology GO:0016987 Gene expression at wheat-expression.com (expVIP)
Reference	IWGSC et al. (2018) Shifting the limits in wheat research and breeding using a fully annotated reference genome Science 361.
General Remarks	BLAST Hit Accession: tr|A0A1D6DII6|A0A1D6DII6_WHEAT Human Readable Description: RNA polymerase sigma factor Pfam IDs Description: PF04542: Sigma-70 region 2; PF04539: Sigma-70 region 3; PF04545: Sigma-70, region 4 InterPro IDs Description: IPR000943: RNA polymerase sigma-70; IPR007624: RNA polymerase sigma-70 region 3; IPR007627: RNA polymerase sigma-70 region 2; IPR007630: RNA polymerase sigma-70 region 4; IPR011991: Winged helix-turn-helix DNA-binding domain; IPR013324: RNA polymerase sigma factor, region 3/4; IPR013325: RNA polymerase sigma factor, region 2; IPR014284: RNA polymerase sigma-70 like domain; IPR016262: RNA polymerase sigma factor, SigB/C/D/F, plastid GO IDs Description via InterPro: GO:0003677 MF: DNA binding; GO:0003700 MF: transcription factor activity, sequence-specific DNA binding; GO:0006352 BP: DNA-templated transcription, initiation; GO:0006355 BP: regulation of transcription, DNA-templated; GO:0016987 MF: sigma factor activity
Type	Genomic
Sequence	TraesCS4A01G157100.1 TraesCS4A01G157100.2
Source Species	Triticum aestivum
Source Germplasm	Chinese Spring