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GrainGenes Probe Report: TraesCS2D01G429800

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	TraesCS2D01G429800
Locus	TraesCS2D01G429800.1
URL	[ Hide all but 1 of 22 ] Pfam PF04675 Pfam PF01068 Pfam PF04679 Pfam PF16589 Pfam PF11411 InterPro IPR000977 InterPro IPR001357 InterPro IPR012308 InterPro IPR012309 InterPro IPR012310 InterPro IPR012340 InterPro IPR016059 InterPro IPR021536 Gene Ontology GO:0003677 Gene Ontology GO:0003909 Gene Ontology GO:0003910 Gene Ontology GO:0005524 Gene Ontology GO:0006281 Gene Ontology GO:0006310 Gene Ontology GO:0051103 Gene Ontology GO:0071897 Gene expression at wheat-expression.com (expVIP)
Reference	IWGSC et al. (2018) Shifting the limits in wheat research and breeding using a fully annotated reference genome Science 361.
General Remarks	BLAST Hit Accession: tr|A0A1D6RJP9|A0A1D6RJP9_WHEAT Human Readable Description: DNA ligase Pfam IDs Description: PF04675: DNA ligase N terminus; PF01068: ATP dependent DNA ligase domain; PF04679: ATP dependent DNA ligase C terminal region; PF16589: BRCT domain, a BRCA1 C-terminus domain; PF11411: DNA ligase IV InterPro IDs Description: IPR000977: DNA ligase, ATP-dependent; IPR001357: BRCT domain; IPR012308: DNA ligase, ATP-dependent, N-terminal; IPR012309: DNA ligase, ATP-dependent, C-terminal; IPR012310: DNA ligase, ATP-dependent, central; IPR012340: Nucleic acid-binding, OB-fold; IPR016059: DNA ligase, ATP-dependent, conserved site; IPR021536: DNA ligase IV domain GO IDs Description via InterPro: GO:0003677 MF: DNA binding; GO:0003909 MF: DNA ligase activity; GO:0003910 MF: DNA ligase (ATP) activity; GO:0005524 MF: ATP binding; GO:0006281 BP: DNA repair; GO:0006310 BP: DNA recombination; GO:0051103 BP: DNA ligation involved in DNA repair; GO:0071897 BP: DNA biosynthetic process
Type	Genomic
Sequence	TraesCS2D01G429800.1 TraesCS2D01G429800.2
Source Species	Triticum aestivum
Source Germplasm	Chinese Spring