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GrainGenes Probe Report: HORVU.MOREX.r2.7HG0620980

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.7HG0620980
Locus	HORVU.MOREX.r2.7HG0620980.1
URL	Gene Ontology GO:0000375 [ Show all 17 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 19 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: PRLI-interacting factor GO:0000375; biological_process; RNA splicing, via transesterification reactions GO:0000398; biological_process; mRNA splicing, via spliceosome GO:0003677; molecular_function; DNA binding GO:0003723; molecular_function; RNA binding GO:0005515; molecular_function; protein binding GO:0005634; cellular_component; nucleus GO:0005654; cellular_component; nucleoplasm GO:0005681; cellular_component; spliceosomal complex GO:0005829; cellular_component; cytosol GO:0006397; biological_process; mRNA processing GO:0006405; biological_process; RNA export from nucleus GO:0006406; biological_process; mRNA export from nucleus GO:0008380; biological_process; RNA splicing GO:0016363; cellular_component; nuclear matrix GO:0016607; cellular_component; nuclear speck GO:0031124; biological_process; mRNA 3'-end processing GO:0071013; cellular_component; catalytic step 2 spliceosome
Type	Genomic
Sequence	HORVU.MOREX.r2.7HG0620980.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)