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GrainGenes Probe Report: HORVU.MOREX.r2.7HG0607660

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.7HG0607660
Locus	HORVU.MOREX.r2.7HG0607660.1
URL	Gene Ontology GO:0001104 [ Show all 33 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 35 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC1: Complete protein with subject and query coverage above the BLAST threshold in the UniMag database (validated proteins from Magnoliophyta). Functional annotation published with the genome: Beta-glucosidase, putative GO:0003712; molecular_function; transcription coregulator activity The GO term GO:0001104 was intially assigned to this transcript and is now obsolete. It has been replaced by: GO:0003712 GO:0003676; molecular_function; nucleic acid binding GO:0003677; molecular_function; DNA binding GO:0003713; molecular_function; transcription coactivator activity GO:0003723; molecular_function; RNA binding GO:0005102; molecular_function; signaling receptor binding GO:0005634; cellular_component; nucleus GO:0006351; biological_process; transcription, DNA-templated GO:0006355; biological_process; regulation of transcription, DNA-templated GO:0007005; biological_process; mitochondrion organization GO:0008134; molecular_function; transcription factor binding GO:0010822; biological_process; positive regulation of mitochondrion organization GO:0014850; biological_process; response to muscle activity GO:0016605; cellular_component; PML body GO:0022904; biological_process; respiratory electron transport chain GO:0030374; molecular_function; nuclear receptor transcription coactivator activity GO:0031490; molecular_function; chromatin DNA binding GO:0032922; biological_process; circadian regulation of gene expression GO:0034599; biological_process; cellular response to oxidative stress GO:0042752; biological_process; regulation of circadian rhythm GO:0043524; biological_process; negative regulation of neuron apoptotic process GO:0043565; molecular_function; sequence-specific DNA binding GO:0045333; biological_process; cellular respiration GO:0045893; biological_process; positive regulation of transcription, DNA-templated GO:0045944; biological_process; positive regulation of transcription by RNA polymerase II GO:0046321; biological_process; positive regulation of fatty acid oxidation GO:0048511; biological_process; rhythmic process GO:0050873; biological_process; brown fat cell differentiation GO:0051091; biological_process; positive regulation of DNA-binding transcription factor activity GO:0097009; biological_process; energy homeostasis GO:1901215; biological_process; negative regulation of neuron death GO:2001171; biological_process; positive regulation of ATP biosynthetic process
Type	Genomic
Sequence	HORVU.MOREX.r2.7HG0607660.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)