Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Probe Report: HORVU.MOREX.r2.7HG0594140

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.7HG0594140
Locus	HORVU.MOREX.r2.7HG0594140.1
URL	Gene Ontology GO:0001750 [ Show all 40 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 42 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Transposon protein, putative, Mutator sub-class GO:0001750; cellular_component; photoreceptor outer segment GO:0004721; molecular_function; phosphoprotein phosphatase activity GO:0004725; molecular_function; protein tyrosine phosphatase activity GO:0005001; molecular_function; transmembrane receptor protein tyrosine phosphatase activity GO:0005515; molecular_function; protein binding GO:0005886; cellular_component; plasma membrane GO:0005887; cellular_component; integral component of plasma membrane GO:0005911; cellular_component; cell-cell junction GO:0005912; cellular_component; adherens junction GO:0006470; biological_process; protein dephosphorylation GO:0007155; biological_process; cell adhesion GO:0007165; biological_process; signal transduction GO:0007179; biological_process; transforming growth factor beta receptor signaling pathway GO:0008013; molecular_function; beta-catenin binding GO:0008285; biological_process; negative regulation of cell population proliferation GO:0009986; cellular_component; cell surface GO:0010839; biological_process; negative regulation of keratinocyte proliferation GO:0016020; cellular_component; membrane GO:0016021; cellular_component; integral component of membrane GO:0016311; biological_process; dephosphorylation GO:0016477; biological_process; cell migration GO:0016787; molecular_function; hydrolase activity GO:0016791; molecular_function; phosphatase activity GO:0019901; molecular_function; protein kinase binding GO:0030054; cellular_component; cell junction GO:0030336; biological_process; negative regulation of cell migration GO:0030424; cellular_component; axon GO:0030425; cellular_component; dendrite GO:0031175; biological_process; neuron projection development GO:0031256; cellular_component; leading edge membrane GO:0034394; biological_process; protein localization to cell surface GO:0034614; biological_process; cellular response to reactive oxygen species GO:0034644; biological_process; cellular response to UV GO:0035335; biological_process; peptidyl-tyrosine dephosphorylation GO:0043025; cellular_component; neuronal cell body GO:0043231; cellular_component; intracellular membrane-bounded organelle GO:0045295; molecular_function; gamma-catenin binding GO:0045786; biological_process; negative regulation of cell cycle GO:0045892; biological_process; negative regulation of transcription, DNA-templated GO:0048041; biological_process; focal adhesion assembly
Type	Genomic
Sequence	HORVU.MOREX.r2.7HG0594140.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)