Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Probe Report: HORVU.MOREX.r2.7HG0593920

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.7HG0593920
Locus	HORVU.MOREX.r2.7HG0593920.1
URL	Gene Ontology GO:0002039 [ Show all 23 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 25 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: cysteine-rich/transmembrane domain A-like protein GO:0002039; molecular_function; p53 binding GO:0005070; molecular_function; SH3/SH2 adaptor activity GO:0005515; molecular_function; protein binding GO:0005634; cellular_component; nucleus GO:0005654; cellular_component; nucleoplasm GO:0005737; cellular_component; cytoplasm GO:0005739; cellular_component; mitochondrion GO:0005829; cellular_component; cytosol GO:0006915; biological_process; apoptotic process GO:0007049; biological_process; cell cycle GO:0007165; biological_process; signal transduction GO:0017124; molecular_function; SH3 domain binding GO:0030054; cellular_component; cell junction GO:0042802; molecular_function; identical protein binding GO:0042981; biological_process; regulation of apoptotic process GO:0045786; biological_process; negative regulation of cell cycle GO:0048471; cellular_component; perinuclear region of cytoplasm GO:0051059; molecular_function; NF-kappaB binding GO:0072332; biological_process; intrinsic apoptotic signaling pathway by p53 class mediator GO:1900119; biological_process; positive regulation of execution phase of apoptosis GO:1900740; biological_process; positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway GO:1901216; biological_process; positive regulation of neuron death GO:1901796; biological_process; regulation of signal transduction by p53 class mediator
Type	Genomic
Sequence	HORVU.MOREX.r2.7HG0593920.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)