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GrainGenes Probe Report: HORVU.MOREX.r2.7HG0586570

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.7HG0586570
Locus	HORVU.MOREX.r2.7HG0586570.1
URL	Gene Ontology GO:0004004 [ Show all 16 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 19 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: COP9 signalosome complex subunit 5 GO:0003724; molecular_function; RNA helicase activity The GO term GO:0004004 was intially assigned to this transcript and is now obsolete. It has been replaced by: GO:0003724 GO:0000166; molecular_function; nucleotide binding GO:0000932; cellular_component; P-body GO:0003676; molecular_function; nucleic acid binding GO:0003723; molecular_function; RNA binding GO:0004386; molecular_function; helicase activity GO:0005524; molecular_function; ATP binding GO:0005730; cellular_component; nucleolus GO:0005737; cellular_component; cytoplasm GO:0006397; biological_process; mRNA processing GO:0006417; biological_process; regulation of translation GO:0010494; cellular_component; cytoplasmic stress granule GO:0010501; biological_process; RNA secondary structure unwinding GO:0016787; molecular_function; hydrolase activity GO:0033962; biological_process; cytoplasmic mRNA processing body assembly GO:0051028; biological_process; mRNA transport
Type	Genomic
Sequence	HORVU.MOREX.r2.7HG0586570.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)