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GrainGenes Probe Report: HORVU.MOREX.r2.7HG0582000

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.7HG0582000
Locus	HORVU.MOREX.r2.7HG0582000.1
URL	Gene Ontology GO:0001540 [ Show all 20 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 22 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Chaperone protein dnaJ GO:0001540; molecular_function; amyloid-beta binding GO:0005044; molecular_function; scavenger receptor activity GO:0005581; cellular_component; collagen trimer GO:0005829; cellular_component; cytosol GO:0005886; cellular_component; plasma membrane GO:0006897; biological_process; endocytosis GO:0006898; biological_process; receptor-mediated endocytosis GO:0006911; biological_process; phagocytosis, engulfment GO:0010629; biological_process; negative regulation of gene expression GO:0010744; biological_process; positive regulation of macrophage derived foam cell differentiation GO:0010886; biological_process; positive regulation of cholesterol storage GO:0016020; cellular_component; membrane GO:0016021; cellular_component; integral component of membrane GO:0030169; molecular_function; low-density lipoprotein particle binding GO:0030301; biological_process; cholesterol transport GO:0031410; cellular_component; cytoplasmic vesicle GO:0034362; cellular_component; low-density lipoprotein particle GO:0034381; biological_process; plasma lipoprotein particle clearance GO:0042953; biological_process; lipoprotein transport GO:0097242; biological_process; amyloid-beta clearance
Type	Genomic
Sequence	HORVU.MOREX.r2.7HG0582000.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)