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GrainGenes Probe Report: HORVU.MOREX.r2.7HG0574110

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.7HG0574110
Locus	HORVU.MOREX.r2.7HG0574110.1
URL	Gene Ontology GO:0008026 [ Show all 67 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 69 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC1: Complete protein with subject and query coverage above the BLAST threshold in the UniMag database (validated proteins from Magnoliophyta). Functional annotation published with the genome: Exocyst complex component Sec8-like GO:0004386; molecular_function; helicase activity The GO term GO:0008026 was intially assigned to this transcript and is now obsolete. It has been replaced by: GO:0004386 GO:0000166; molecular_function; nucleotide binding GO:0001172; biological_process; transcription, RNA-templated GO:0003723; molecular_function; RNA binding GO:0003824; molecular_function; catalytic activity GO:0003968; molecular_function; RNA-directed 5'-3' RNA polymerase activity GO:0004197; molecular_function; cysteine-type endopeptidase activity GO:0004252; molecular_function; serine-type endopeptidase activity GO:0005198; molecular_function; structural molecule activity GO:0005216; molecular_function; ion channel activity GO:0005524; molecular_function; ATP binding GO:0005576; cellular_component; extracellular region GO:0006351; biological_process; transcription, DNA-templated GO:0006355; biological_process; regulation of transcription, DNA-templated GO:0006508; biological_process; proteolysis GO:0006811; biological_process; ion transport GO:0008152; biological_process; metabolic process GO:0008233; molecular_function; peptidase activity GO:0008234; molecular_function; cysteine-type peptidase activity GO:0008236; molecular_function; serine-type peptidase activity GO:0008270; molecular_function; zinc ion binding GO:0016020; cellular_component; membrane GO:0016021; cellular_component; integral component of membrane GO:0016032; biological_process; viral process GO:0016740; molecular_function; transferase activity GO:0016779; molecular_function; nucleotidyltransferase activity GO:0016787; molecular_function; hydrolase activity GO:0017111; molecular_function; nucleoside-triphosphatase activity GO:0017124; molecular_function; SH3 domain binding GO:0019012; cellular_component; virion GO:0019013; cellular_component; viral nucleocapsid GO:0019028; cellular_component; viral capsid GO:0019031; cellular_component; viral envelope GO:0019062; biological_process; virion attachment to host cell GO:0019087; biological_process; transformation of host cell by virus GO:0020002; cellular_component; host cell plasma membrane GO:0030430; cellular_component; host cell cytoplasm GO:0030683; biological_process; mitigation of host immune response by virus GO:0033644; cellular_component; host cell membrane GO:0033650; cellular_component; host cell mitochondrion GO:0034220; biological_process; ion transmembrane transport GO:0039502; biological_process; suppression by virus of host type I interferon-mediated signaling pathway GO:0039503; biological_process; suppression by virus of host innate immune response GO:0039520; biological_process; induction by virus of host autophagy GO:0039545; biological_process; suppression by virus of host MAVS activity GO:0039547; biological_process; suppression by virus of host TRAF activity GO:0039563; biological_process; suppression by virus of host STAT1 activity GO:0039645; biological_process; modulation by virus of host G1/S transition checkpoint GO:0039654; biological_process; fusion of virus membrane with host endosome membrane GO:0039663; biological_process; membrane fusion involved in viral entry into host cell GO:0039694; biological_process; viral RNA genome replication GO:0039707; biological_process; pore formation by virus in membrane of host cell GO:0042025; cellular_component; host cell nucleus GO:0044165; cellular_component; host cell endoplasmic reticulum GO:0044167; cellular_component; host cell endoplasmic reticulum membrane GO:0044186; cellular_component; host cell lipid droplet GO:0044191; cellular_component; host cell mitochondrial membrane GO:0044220; cellular_component; host cell perinuclear region of cytoplasm GO:0044385; cellular_component; integral to membrane of host cell GO:0046718; biological_process; viral entry into host cell GO:0046872; molecular_function; metal ion binding GO:0051259; biological_process; protein complex oligomerization GO:0055036; cellular_component; virion membrane GO:0060153; biological_process; modulation by virus of host cell cycle GO:0075509; biological_process; endocytosis involved in viral entry into host cell GO:0075512; biological_process; clathrin-dependent endocytosis of virus by host cell
Type	Genomic
Sequence	HORVU.MOREX.r2.7HG0574110.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)