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GrainGenes Probe Report: HORVU.MOREX.r2.7HG0566440

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.7HG0566440
Locus	HORVU.MOREX.r2.7HG0566440.1
URL	Gene Ontology GO:0005634 [ Show all 11 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 13 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Retrotransposon protein, putative, unclassified GO:0005634; cellular_component; nucleus GO:0005654; cellular_component; nucleoplasm GO:0006325; biological_process; chromatin organization GO:0010468; biological_process; regulation of gene expression GO:0016491; molecular_function; oxidoreductase activity GO:0032452; molecular_function; histone demethylase activity GO:0046872; molecular_function; metal ion binding GO:0051213; molecular_function; dioxygenase activity GO:0055114; biological_process; oxidation-reduction process GO:0071557; biological_process; histone H3-K27 demethylation GO:0071558; molecular_function; histone demethylase activity (H3-K27 specific)
Type	Genomic
Sequence	HORVU.MOREX.r2.7HG0566440.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)