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GrainGenes Probe Report: HORVU.MOREX.r2.7HG0555330

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.7HG0555330
Locus	HORVU.MOREX.r2.7HG0555330.1
URL	Gene Ontology GO:0000243 [ Show all 15 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 17 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Jasmonate zim-domain protein GO:0000243; cellular_component; commitment complex GO:0000395; biological_process; mRNA 5'-splice site recognition GO:0000398; biological_process; mRNA splicing, via spliceosome GO:0003676; molecular_function; nucleic acid binding GO:0003723; molecular_function; RNA binding GO:0003729; molecular_function; mRNA binding GO:0005634; cellular_component; nucleus GO:0005681; cellular_component; spliceosomal complex GO:0005685; cellular_component; U1 snRNP GO:0005829; cellular_component; cytosol GO:0006397; biological_process; mRNA processing GO:0008380; biological_process; RNA splicing GO:0030619; molecular_function; U1 snRNA binding GO:0071004; cellular_component; U2-type prespliceosome GO:0071011; cellular_component; precatalytic spliceosome
Type	Genomic
Sequence	HORVU.MOREX.r2.7HG0555330.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)