Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Probe Report: HORVU.MOREX.r2.7HG0554530

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.7HG0554530
Locus	HORVU.MOREX.r2.7HG0554530.1
URL	Gene Ontology GO:0001953 [ Show all 50 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 52 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Serine/threonine-protein phosphatase 7 long form-like protein GO:0001953; biological_process; negative regulation of cell-matrix adhesion GO:0001974; biological_process; blood vessel remodeling GO:0002011; biological_process; morphogenesis of an epithelial sheet GO:0002456; biological_process; T cell mediated immunity GO:0003184; biological_process; pulmonary valve morphogenesis GO:0003215; biological_process; cardiac right ventricle morphogenesis GO:0005112; molecular_function; Notch binding GO:0005509; molecular_function; calcium ion binding GO:0005515; molecular_function; protein binding GO:0005543; molecular_function; phospholipid binding GO:0005886; cellular_component; plasma membrane GO:0005912; cellular_component; adherens junction GO:0007154; biological_process; cell communication GO:0007219; biological_process; Notch signaling pathway GO:0007275; biological_process; multicellular organism development GO:0009887; biological_process; animal organ morphogenesis GO:0010469; biological_process; regulation of signaling receptor activity GO:0016020; cellular_component; membrane GO:0016021; cellular_component; integral component of membrane GO:0016324; cellular_component; apical plasma membrane GO:0022408; biological_process; negative regulation of cell-cell adhesion GO:0030336; biological_process; negative regulation of cell migration GO:0032495; biological_process; response to muramyl dipeptide GO:0035909; biological_process; aorta morphogenesis GO:0042127; biological_process; regulation of cell population proliferation GO:0042491; biological_process; inner ear auditory receptor cell differentiation GO:0043010; biological_process; camera-type eye development GO:0045177; cellular_component; apical part of cell GO:0045596; biological_process; negative regulation of cell differentiation GO:0045599; biological_process; negative regulation of fat cell differentiation GO:0045602; biological_process; negative regulation of endothelial cell differentiation GO:0045639; biological_process; positive regulation of myeloid cell differentiation GO:0045665; biological_process; negative regulation of neuron differentiation GO:0045669; biological_process; positive regulation of osteoblast differentiation GO:0045747; biological_process; positive regulation of Notch signaling pathway GO:0045944; biological_process; positive regulation of transcription by RNA polymerase II GO:0048018; molecular_function; receptor ligand activity GO:0048839; biological_process; inner ear development GO:0060411; biological_process; cardiac septum morphogenesis GO:0061073; biological_process; ciliary body morphogenesis GO:0061156; biological_process; pulmonary artery morphogenesis GO:0061309; biological_process; cardiac neural crest cell development involved in outflow tract morphogenesis GO:0061314; biological_process; Notch signaling involved in heart development GO:0061444; biological_process; endocardial cushion cell development GO:0072006; biological_process; nephron development GO:0072015; biological_process; glomerular visceral epithelial cell development GO:0072017; biological_process; distal tubule development GO:0072070; biological_process; loop of Henle development GO:0097150; biological_process; neuronal stem cell population maintenance GO:2000737; biological_process; negative regulation of stem cell differentiation
Type	Genomic
Sequence	HORVU.MOREX.r2.7HG0554530.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)