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GrainGenes Probe Report: HORVU.MOREX.r2.7HG0553870

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.7HG0553870
Locus	HORVU.MOREX.r2.7HG0553870.1
URL	Gene Ontology GO:0003677 [ Show all 13 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 15 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Pollen-specific protein SF3 GO:0003677; molecular_function; DNA binding GO:0003887; molecular_function; DNA-directed DNA polymerase activity GO:0005634; cellular_component; nucleus GO:0006281; biological_process; DNA repair GO:0006289; biological_process; nucleotide-excision repair GO:0006302; biological_process; double-strand break repair GO:0006303; biological_process; double-strand break repair via nonhomologous end joining GO:0010224; biological_process; response to UV-B GO:0030145; molecular_function; manganese ion binding GO:0034061; molecular_function; DNA polymerase activity GO:0051575; molecular_function; 5'-deoxyribose-5-phosphate lyase activity GO:0071897; biological_process; DNA biosynthetic process GO:0097510; biological_process; base-excision repair, AP site formation via deaminated base removal
Type	Genomic
Sequence	HORVU.MOREX.r2.7HG0553870.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)