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GrainGenes Probe Report: HORVU.MOREX.r2.7HG0547900

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.7HG0547900
Locus	HORVU.MOREX.r2.7HG0547900.1
URL	Gene Ontology GO:0002376 [ Show all 28 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 30 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: RNA-binding (RRM/RBD/RNP motifs) family protein GO:0002376; biological_process; immune system process GO:0004842; molecular_function; ubiquitin-protein transferase activity GO:0005515; molecular_function; protein binding GO:0005622; cellular_component; intracellular GO:0005737; cellular_component; cytoplasm GO:0005783; cellular_component; endoplasmic reticulum GO:0005789; cellular_component; endoplasmic reticulum membrane GO:0008270; molecular_function; zinc ion binding GO:0009653; biological_process; anatomical structure morphogenesis GO:0010332; biological_process; response to gamma radiation GO:0010942; biological_process; positive regulation of cell death GO:0016020; cellular_component; membrane GO:0016021; cellular_component; integral component of membrane GO:0016239; biological_process; positive regulation of macroautophagy GO:0016567; biological_process; protein ubiquitination GO:0016740; molecular_function; transferase activity GO:0030433; biological_process; ubiquitin-dependent ERAD pathway GO:0032897; biological_process; negative regulation of viral transcription GO:0043123; biological_process; positive regulation of I-kappaB kinase/NF-kappaB signaling GO:0043161; biological_process; proteasome-mediated ubiquitin-dependent protein catabolic process GO:0044322; cellular_component; endoplasmic reticulum quality control compartment GO:0045087; biological_process; innate immune response GO:0046872; molecular_function; metal ion binding GO:0051092; biological_process; positive regulation of NF-kappaB transcription factor activity GO:0051865; biological_process; protein autoubiquitination GO:0097038; cellular_component; perinuclear endoplasmic reticulum GO:1902187; biological_process; negative regulation of viral release from host cell GO:1904380; biological_process; endoplasmic reticulum mannose trimming
Type	Genomic
Sequence	HORVU.MOREX.r2.7HG0547900.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)