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GrainGenes Probe Report: HORVU.MOREX.r2.7HG0544530

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.7HG0544530
Locus	HORVU.MOREX.r2.7HG0544530.1
URL	Gene Ontology GO:0000166 [ Show all 44 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 46 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Craniofacial development protein 1 GO:0000166; molecular_function; nucleotide binding GO:0001891; cellular_component; phagocytic cup GO:0001931; cellular_component; uropod GO:0005515; molecular_function; protein binding GO:0005524; molecular_function; ATP binding GO:0005634; cellular_component; nucleus GO:0005654; cellular_component; nucleoplasm GO:0005737; cellular_component; cytoplasm GO:0005829; cellular_component; cytosol GO:0005886; cellular_component; plasma membrane GO:0005912; cellular_component; adherens junction GO:0005925; cellular_component; focal adhesion GO:0006661; biological_process; phosphatidylinositol biosynthetic process GO:0006887; biological_process; exocytosis GO:0006897; biological_process; endocytosis GO:0006909; biological_process; phagocytosis GO:0006935; biological_process; chemotaxis GO:0007155; biological_process; cell adhesion GO:0010008; cellular_component; endosome membrane GO:0012505; cellular_component; endomembrane system GO:0014066; biological_process; regulation of phosphatidylinositol 3-kinase signaling GO:0016020; cellular_component; membrane GO:0016079; biological_process; synaptic vesicle exocytosis GO:0016301; molecular_function; kinase activity GO:0016307; molecular_function; phosphatidylinositol phosphate kinase activity GO:0016308; molecular_function; 1-phosphatidylinositol-4-phosphate 5-kinase activity GO:0016310; biological_process; phosphorylation GO:0016740; molecular_function; transferase activity GO:0030036; biological_process; actin cytoskeleton organization GO:0030054; cellular_component; cell junction GO:0030593; biological_process; neutrophil chemotaxis GO:0032587; cellular_component; ruffle membrane GO:0034333; biological_process; adherens junction assembly GO:0042995; cellular_component; cell projection GO:0045202; cellular_component; synapse GO:0046488; biological_process; phosphatidylinositol metabolic process GO:0046854; biological_process; phosphatidylinositol phosphorylation GO:0048488; biological_process; synaptic vesicle endocytosis GO:0052811; molecular_function; 1-phosphatidylinositol-3-phosphate 4-kinase activity GO:0052812; molecular_function; phosphatidylinositol-3, 4-bisphosphate 5-kinase activity GO:0061024; biological_process; membrane organization GO:0072583; biological_process; clathrin-dependent endocytosis GO:0098609; biological_process; cell-cell adhesion GO:0098793; cellular_component; presynapse
Type	Genomic
Sequence	HORVU.MOREX.r2.7HG0544530.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)