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GrainGenes Probe Report: HORVU.MOREX.r2.7HG0544300

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.7HG0544300
Locus	HORVU.MOREX.r2.7HG0544300.1
URL	Gene Ontology GO:0005216 [ Show all 35 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 37 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: ATP-dependent zinc metalloprotease FtsH 1 GO:0005216; molecular_function; ion channel activity GO:0005244; molecular_function; voltage-gated ion channel activity GO:0005245; molecular_function; voltage-gated calcium channel activity GO:0005248; molecular_function; voltage-gated sodium channel activity GO:0005262; molecular_function; calcium channel activity GO:0005515; molecular_function; protein binding GO:0005886; cellular_component; plasma membrane GO:0005887; cellular_component; integral component of plasma membrane GO:0005891; cellular_component; voltage-gated calcium channel complex GO:0006811; biological_process; ion transport GO:0006816; biological_process; calcium ion transport GO:0006936; biological_process; muscle contraction GO:0007517; biological_process; muscle organ development GO:0007520; biological_process; myoblast fusion GO:0008016; biological_process; regulation of heart contraction GO:0008332; molecular_function; low voltage-gated calcium channel activity GO:0016020; cellular_component; membrane GO:0016021; cellular_component; integral component of membrane GO:0019228; biological_process; neuronal action potential GO:0032342; biological_process; aldosterone biosynthetic process GO:0032870; biological_process; cellular response to hormone stimulus GO:0034651; biological_process; cortisol biosynthetic process GO:0034765; biological_process; regulation of ion transmembrane transport GO:0035725; biological_process; sodium ion transmembrane transport GO:0035865; biological_process; cellular response to potassium ion GO:0042391; biological_process; regulation of membrane potential GO:0045956; biological_process; positive regulation of calcium ion-dependent exocytosis GO:0046872; molecular_function; metal ion binding GO:0055085; biological_process; transmembrane transport GO:0070509; biological_process; calcium ion import GO:0070588; biological_process; calcium ion transmembrane transport GO:0086010; biological_process; membrane depolarization during action potential GO:0097110; molecular_function; scaffold protein binding GO:0098662; biological_process; inorganic cation transmembrane transport GO:2000344; biological_process; positive regulation of acrosome reaction
Type	Genomic
Sequence	HORVU.MOREX.r2.7HG0544300.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)