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GrainGenes Probe Report: HORVU.MOREX.r2.7HG0541820

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.7HG0541820
Locus	HORVU.MOREX.r2.7HG0541820.1
URL	Gene Ontology GO:0001077 [ Show all 22 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 25 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Flavin-containing monooxygenase The GO term GO:0001077 was intially assigned to this transcript and is now obsolete. It has been replaced by: GO:0001228 GO:0000978; molecular_function; RNA polymerase II cis-regulatory region sequence-specific DNA binding GO:0001046; molecular_function; core promoter sequence-specific DNA binding GO:0001221; molecular_function; transcription cofactor binding GO:0003677; molecular_function; DNA binding GO:0003700; molecular_function; DNA-binding transcription factor activity GO:0005515; molecular_function; protein binding GO:0005634; cellular_component; nucleus GO:0005654; cellular_component; nucleoplasm GO:0006351; biological_process; transcription, DNA-templated GO:0006355; biological_process; regulation of transcription, DNA-templated GO:0006366; biological_process; transcription by RNA polymerase II GO:0008134; molecular_function; transcription factor binding GO:0016602; cellular_component; CCAAT-binding factor complex GO:0032993; cellular_component; protein-DNA complex GO:0043565; molecular_function; sequence-specific DNA binding GO:0045893; biological_process; positive regulation of transcription, DNA-templated GO:0045944; biological_process; positive regulation of transcription by RNA polymerase II GO:0048511; biological_process; rhythmic process GO:0090575; cellular_component; RNA polymerase II transcription factor complex GO:2000036; biological_process; regulation of stem cell population maintenance GO:2000648; biological_process; positive regulation of stem cell proliferation
Type	Genomic
Sequence	HORVU.MOREX.r2.7HG0541820.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)