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GrainGenes Probe Report: HORVU.MOREX.r2.6HG0482660

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Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.


Probe
HORVU.MOREX.r2.6HG0482660
Locus
HORVU.MOREX.r2.6HG0482660.1
URL
Gene Ontology GO:0000118
[ Show all 74 ]
Reference
ReferenceMonat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks
[ Hide all but 1 of 76 ]
Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database).
Functional annotation published with the genome: Transposon protein, putative, CACTA, En/Spm sub-class
GO:0000118; cellular_component; histone deacetylase complex
GO:0000122; biological_process; negative regulation of transcription by RNA polymerase II
GO:0001047; molecular_function; core promoter binding
GO:0001085; molecular_function; RNA polymerase II transcription factor binding
GO:0001501; biological_process; skeletal system development
GO:0002076; biological_process; osteoblast development
GO:0003677; molecular_function; DNA binding
GO:0003682; molecular_function; chromatin binding
GO:0003714; molecular_function; transcription corepressor activity
GO:0004407; molecular_function; histone deacetylase activity
GO:0005515; molecular_function; protein binding
GO:0005634; cellular_component; nucleus
GO:0005654; cellular_component; nucleoplasm
GO:0005737; cellular_component; cytoplasm
GO:0005829; cellular_component; cytosol
GO:0006325; biological_process; chromatin organization
GO:0006338; biological_process; chromatin remodeling
GO:0006351; biological_process; transcription, DNA-templated
GO:0006355; biological_process; regulation of transcription, DNA-templated
GO:0006476; biological_process; protein deacetylation
GO:0008134; molecular_function; transcription factor binding
GO:0008270; molecular_function; zinc ion binding
GO:0008284; biological_process; positive regulation of cell population proliferation
GO:0008285; biological_process; negative regulation of cell population proliferation
GO:0010592; biological_process; positive regulation of lamellipodium assembly
GO:0010832; biological_process; negative regulation of myotube differentiation
GO:0010882; biological_process; regulation of cardiac muscle contraction by calcium ion signaling
GO:0014894; biological_process; response to denervation involved in regulation of muscle adaptation
GO:0014911; biological_process; positive regulation of smooth muscle cell migration
GO:0016575; biological_process; histone deacetylation
GO:0016787; molecular_function; hydrolase activity
GO:0017053; cellular_component; transcriptional repressor complex
GO:0019901; molecular_function; protein kinase binding
GO:0030017; cellular_component; sarcomere
GO:0030018; cellular_component; Z disc
GO:0030955; molecular_function; potassium ion binding
GO:0031594; cellular_component; neuromuscular junction
GO:0031672; cellular_component; A band
GO:0032041; molecular_function; NAD-dependent histone deacetylase activity (H3-K14 specific)
GO:0032991; cellular_component; protein-containing complex
GO:0033235; biological_process; positive regulation of protein sumoylation
GO:0033558; molecular_function; protein deacetylase activity
GO:0033613; molecular_function; activating transcription factor binding
GO:0034983; biological_process; peptidyl-lysine deacetylation
GO:0040029; biological_process; regulation of gene expression, epigenetic
GO:0042493; biological_process; response to drug
GO:0042641; cellular_component; actomyosin
GO:0042802; molecular_function; identical protein binding
GO:0042826; molecular_function; histone deacetylase binding
GO:0043393; biological_process; regulation of protein binding
GO:0043433; biological_process; negative regulation of DNA-binding transcription factor activity
GO:0043525; biological_process; positive regulation of neuron apoptotic process
GO:0043565; molecular_function; sequence-specific DNA binding
GO:0044212; molecular_function; transcription regulatory region DNA binding
GO:0045668; biological_process; negative regulation of osteoblast differentiation
GO:0045820; biological_process; negative regulation of glycolytic process
GO:0045892; biological_process; negative regulation of transcription, DNA-templated
GO:0045893; biological_process; positive regulation of transcription, DNA-templated
GO:0045944; biological_process; positive regulation of transcription by RNA polymerase II
GO:0046872; molecular_function; metal ion binding
GO:0048661; biological_process; positive regulation of smooth muscle cell proliferation
GO:0048742; biological_process; regulation of skeletal muscle fiber development
GO:0051091; biological_process; positive regulation of DNA-binding transcription factor activity
GO:0051153; biological_process; regulation of striated muscle cell differentiation
GO:0070491; molecular_function; repressing transcription factor binding
GO:0070555; biological_process; response to interleukin-1
GO:0070932; biological_process; histone H3 deacetylation
GO:0070933; biological_process; histone H4 deacetylation
GO:0071260; biological_process; cellular response to mechanical stimulus
GO:0071356; biological_process; cellular response to tumor necrosis factor
GO:0071374; biological_process; cellular response to parathyroid hormone stimulus
GO:1902894; biological_process; negative regulation of pri-miRNA transcription by RNA polymerase II
GO:1903428; biological_process; positive regulation of reactive oxygen species biosynthetic process
GO:1990841; molecular_function; promoter-specific chromatin binding
Type
Genomic
Sequence
HORVU.MOREX.r2.6HG0482660.1
Source Species
Hordeum vulgare
Source Germplasm
Morex (barley)