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GrainGenes Probe Report: HORVU.MOREX.r2.6HG0482320

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.6HG0482320
Locus	HORVU.MOREX.r2.6HG0482320.1
URL	Gene Ontology GO:0004004 [ Show all 29 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 32 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Retrotransposon protein, putative, Ty1-copia subclass GO:0003724; molecular_function; RNA helicase activity The GO term GO:0004004 was intially assigned to this transcript and is now obsolete. It has been replaced by: GO:0003724 GO:0000166; molecular_function; nucleotide binding GO:0000958; biological_process; mitochondrial mRNA catabolic process GO:0000962; biological_process; positive regulation of mitochondrial RNA catabolic process GO:0000965; biological_process; mitochondrial RNA 3'-end processing GO:0003677; molecular_function; DNA binding GO:0003678; molecular_function; DNA helicase activity GO:0003725; molecular_function; double-stranded RNA binding GO:0004386; molecular_function; helicase activity GO:0005524; molecular_function; ATP binding GO:0005634; cellular_component; nucleus GO:0005739; cellular_component; mitochondrion GO:0005759; cellular_component; mitochondrial matrix GO:0006310; biological_process; DNA recombination GO:0006401; biological_process; RNA catabolic process GO:0016787; molecular_function; hydrolase activity GO:0016817; molecular_function; hydrolase activity, acting on acid anhydrides GO:0030307; biological_process; positive regulation of cell growth GO:0032508; biological_process; DNA duplex unwinding GO:0034458; molecular_function; 3'-5' RNA helicase activity GO:0035945; biological_process; mitochondrial ncRNA surveillance GO:0035946; biological_process; mitochondrial mRNA surveillance GO:0042645; cellular_component; mitochondrial nucleoid GO:0042803; molecular_function; protein homodimerization activity GO:0043066; biological_process; negative regulation of apoptotic process GO:0045025; cellular_component; mitochondrial degradosome GO:0070584; biological_process; mitochondrion morphogenesis GO:0070827; biological_process; chromatin maintenance GO:2000827; biological_process; mitochondrial RNA surveillance
Type	Genomic
Sequence	HORVU.MOREX.r2.6HG0482320.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)