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GrainGenes Probe Report: HORVU.MOREX.r2.6HG0478460

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.6HG0478460
Locus	HORVU.MOREX.r2.6HG0478460.1
URL	Gene Ontology GO:0004970 [ Show all 33 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 35 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Non-specific serine/threonine protein kinase GO:0004970; molecular_function; ionotropic glutamate receptor activity GO:0005216; molecular_function; ion channel activity GO:0005234; molecular_function; extracellularly glutamate-gated ion channel activity GO:0005515; molecular_function; protein binding GO:0005886; cellular_component; plasma membrane GO:0006811; biological_process; ion transport GO:0007268; biological_process; chemical synaptic transmission GO:0007399; biological_process; nervous system development GO:0008144; molecular_function; drug binding GO:0008328; cellular_component; ionotropic glutamate receptor complex GO:0015277; molecular_function; kainate selective glutamate receptor activity GO:0016020; cellular_component; membrane GO:0016021; cellular_component; integral component of membrane GO:0016595; molecular_function; glutamate binding GO:0022843; molecular_function; voltage-gated cation channel activity GO:0030054; cellular_component; cell junction GO:0030425; cellular_component; dendrite GO:0032229; biological_process; negative regulation of synaptic transmission, GABAergic GO:0032230; biological_process; positive regulation of synaptic transmission, GABAergic GO:0034220; biological_process; ion transmembrane transport GO:0035235; biological_process; ionotropic glutamate receptor signaling pathway GO:0038023; molecular_function; signaling receptor activity GO:0042803; molecular_function; protein homodimerization activity GO:0043025; cellular_component; neuronal cell body GO:0043195; cellular_component; terminal bouton GO:0043235; cellular_component; receptor complex GO:0045202; cellular_component; synapse GO:0045211; cellular_component; postsynaptic membrane GO:0048167; biological_process; regulation of synaptic plasticity GO:0048172; biological_process; regulation of short-term neuronal synaptic plasticity GO:0051967; biological_process; negative regulation of synaptic transmission, glutamatergic GO:0060079; biological_process; excitatory postsynaptic potential GO:0098655; biological_process; cation transmembrane transport
Type	Genomic
Sequence	HORVU.MOREX.r2.6HG0478460.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)