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GrainGenes Probe Report: HORVU.MOREX.r2.6HG0467080

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.6HG0467080
Locus	HORVU.MOREX.r2.6HG0467080.1
URL	Gene Ontology GO:0000139 [ Show all 43 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 45 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Leucine-rich repeat receptor-like protein kinase family protein GO:0000139; cellular_component; Golgi membrane GO:0001774; biological_process; microglial cell activation GO:0001932; biological_process; regulation of protein phosphorylation GO:0002224; biological_process; toll-like receptor signaling pathway GO:0002376; biological_process; immune system process GO:0002755; biological_process; MyD88-dependent toll-like receptor signaling pathway GO:0003725; molecular_function; double-stranded RNA binding GO:0003727; molecular_function; single-stranded RNA binding GO:0004888; molecular_function; transmembrane signaling receptor activity GO:0005737; cellular_component; cytoplasm GO:0005764; cellular_component; lysosome GO:0005768; cellular_component; endosome GO:0005783; cellular_component; endoplasmic reticulum GO:0005789; cellular_component; endoplasmic reticulum membrane GO:0005886; cellular_component; plasma membrane GO:0006954; biological_process; inflammatory response GO:0006955; biological_process; immune response GO:0007165; biological_process; signal transduction GO:0007252; biological_process; I-kappaB phosphorylation GO:0008144; molecular_function; drug binding GO:0010008; cellular_component; endosome membrane GO:0016020; cellular_component; membrane GO:0016021; cellular_component; integral component of membrane GO:0031410; cellular_component; cytoplasmic vesicle GO:0032009; cellular_component; early phagosome GO:0032722; biological_process; positive regulation of chemokine production GO:0032755; biological_process; positive regulation of interleukin-6 production GO:0032757; biological_process; positive regulation of interleukin-8 production GO:0034154; biological_process; toll-like receptor 7 signaling pathway GO:0034162; biological_process; toll-like receptor 9 signaling pathway GO:0035197; molecular_function; siRNA binding GO:0036020; cellular_component; endolysosome membrane GO:0043235; cellular_component; receptor complex GO:0045078; biological_process; positive regulation of interferon-gamma biosynthetic process GO:0045087; biological_process; innate immune response GO:0045335; cellular_component; phagocytic vesicle GO:0045356; biological_process; positive regulation of interferon-alpha biosynthetic process GO:0045359; biological_process; positive regulation of interferon-beta biosynthetic process GO:0045416; biological_process; positive regulation of interleukin-8 biosynthetic process GO:0050729; biological_process; positive regulation of inflammatory response GO:0051607; biological_process; defense response to virus GO:0071260; biological_process; cellular response to mechanical stimulus GO:1901224; biological_process; positive regulation of NIK/NF-kappaB signaling
Type	Genomic
Sequence	HORVU.MOREX.r2.6HG0467080.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)