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GrainGenes Probe Report: HORVU.MOREX.r2.6HG0460570

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.6HG0460570
Locus	HORVU.MOREX.r2.6HG0460570.1
URL	Gene Ontology GO:0000723 [ Show all 58 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 60 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Serine/threonine-protein kinase SMG1 GO:0000723; biological_process; telomere maintenance GO:0003677; molecular_function; DNA binding GO:0003684; molecular_function; damaged DNA binding GO:0003691; molecular_function; double-stranded telomeric DNA binding GO:0003713; molecular_function; transcription coactivator activity GO:0003723; molecular_function; RNA binding GO:0003906; molecular_function; DNA-(apurinic or apyrimidinic site) endonuclease activity GO:0004518; molecular_function; nuclease activity GO:0004519; molecular_function; endonuclease activity GO:0004521; molecular_function; endoribonuclease activity GO:0004527; molecular_function; exonuclease activity GO:0005622; cellular_component; intracellular GO:0005634; cellular_component; nucleus GO:0005654; cellular_component; nucleoplasm GO:0005667; cellular_component; transcription factor complex GO:0005730; cellular_component; nucleolus GO:0005737; cellular_component; cytoplasm GO:0005739; cellular_component; mitochondrion GO:0005783; cellular_component; endoplasmic reticulum GO:0005813; cellular_component; centrosome GO:0006281; biological_process; DNA repair GO:0006284; biological_process; base-excision repair GO:0006310; biological_process; DNA recombination GO:0006351; biological_process; transcription, DNA-templated GO:0006355; biological_process; regulation of transcription, DNA-templated GO:0006974; biological_process; cellular response to DNA damage stimulus GO:0007568; biological_process; aging GO:0008081; molecular_function; phosphoric diester hydrolase activity GO:0008309; molecular_function; double-stranded DNA exodeoxyribonuclease activity GO:0008311; molecular_function; double-stranded DNA 3'-5' exodeoxyribonuclease activity GO:0008408; molecular_function; 3'-5' exonuclease activity GO:0010243; biological_process; response to organonitrogen compound GO:0014912; biological_process; negative regulation of smooth muscle cell migration GO:0016491; molecular_function; oxidoreductase activity GO:0016607; cellular_component; nuclear speck GO:0016787; molecular_function; hydrolase activity GO:0016829; molecular_function; lyase activity GO:0016890; molecular_function; site-specific endodeoxyribonuclease activity, specific for altered base GO:0031490; molecular_function; chromatin DNA binding GO:0042493; biological_process; response to drug GO:0042981; biological_process; regulation of apoptotic process GO:0043488; biological_process; regulation of mRNA stability GO:0044877; molecular_function; protein-containing complex binding GO:0045454; biological_process; cell redox homeostasis GO:0046872; molecular_function; metal ion binding GO:0048471; cellular_component; perinuclear region of cytoplasm GO:0051059; molecular_function; NF-kappaB binding GO:0055114; biological_process; oxidation-reduction process GO:0070301; biological_process; cellular response to hydrogen peroxide GO:0071320; biological_process; cellular response to cAMP GO:0071375; biological_process; cellular response to peptide hormone stimulus GO:0071417; biological_process; cellular response to organonitrogen compound GO:0080111; biological_process; DNA demethylation GO:0090305; biological_process; nucleic acid phosphodiester bond hydrolysis GO:0090502; biological_process; RNA phosphodiester bond hydrolysis, endonucleolytic GO:0097698; biological_process; telomere maintenance via base-excision repair GO:0140078; molecular_function; class I DNA-(apurinic or apyrimidinic site) endonuclease activity GO:1900087; biological_process; positive regulation of G1/S transition of mitotic cell cycle
Type	Genomic
Sequence	HORVU.MOREX.r2.6HG0460570.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)