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GrainGenes Probe Report: HORVU.MOREX.r2.6HG0456610

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.6HG0456610
Locus	HORVU.MOREX.r2.6HG0456610.1
URL	Gene Ontology GO:0000165 [ Show all 56 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 58 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC1: Complete protein with subject and query coverage above the BLAST threshold in the UniMag database (validated proteins from Magnoliophyta). Functional annotation published with the genome: UPF0176 protein GO:0000165; biological_process; MAPK cascade GO:0000166; molecular_function; nucleotide binding GO:0000186; biological_process; activation of MAPKK activity GO:0000187; biological_process; activation of MAPK activity GO:0000287; molecular_function; magnesium ion binding GO:0001934; biological_process; positive regulation of protein phosphorylation GO:0002376; biological_process; immune system process GO:0002931; biological_process; response to ischemia GO:0004672; molecular_function; protein kinase activity GO:0004674; molecular_function; protein serine/threonine kinase activity GO:0004709; molecular_function; MAP kinase kinase kinase activity GO:0005515; molecular_function; protein binding GO:0005524; molecular_function; ATP binding GO:0005737; cellular_component; cytoplasm GO:0005783; cellular_component; endoplasmic reticulum GO:0005829; cellular_component; cytosol GO:0006468; biological_process; protein phosphorylation GO:0006915; biological_process; apoptotic process GO:0007254; biological_process; JNK cascade GO:0008631; biological_process; intrinsic apoptotic signaling pathway in response to oxidative stress GO:0009897; cellular_component; external side of plasma membrane GO:0010666; biological_process; positive regulation of cardiac muscle cell apoptotic process GO:0010941; biological_process; regulation of cell death GO:0016301; molecular_function; kinase activity GO:0016310; biological_process; phosphorylation GO:0016740; molecular_function; transferase activity GO:0019901; molecular_function; protein kinase binding GO:0019903; molecular_function; protein phosphatase binding GO:0019904; molecular_function; protein domain specific binding GO:0032991; cellular_component; protein-containing complex GO:0034198; biological_process; cellular response to amino acid starvation GO:0034976; biological_process; response to endoplasmic reticulum stress GO:0038066; biological_process; p38MAPK cascade GO:0042060; biological_process; wound healing GO:0042802; molecular_function; identical protein binding GO:0042803; molecular_function; protein homodimerization activity GO:0043065; biological_process; positive regulation of apoptotic process GO:0043280; biological_process; positive regulation of cysteine-type endopeptidase activity involved in apoptotic process GO:0043507; biological_process; positive regulation of JUN kinase activity GO:0045087; biological_process; innate immune response GO:0045663; biological_process; positive regulation of myoblast differentiation GO:0045893; biological_process; positive regulation of transcription, DNA-templated GO:0046330; biological_process; positive regulation of JNK cascade GO:0046872; molecular_function; metal ion binding GO:0051403; biological_process; stress-activated MAPK cascade GO:0070059; biological_process; intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress GO:0070301; biological_process; cellular response to hydrogen peroxide GO:0071356; biological_process; cellular response to tumor necrosis factor GO:0072577; biological_process; endothelial cell apoptotic process GO:0097300; biological_process; programmed necrotic cell death GO:1900745; biological_process; positive regulation of p38MAPK cascade GO:1901216; biological_process; positive regulation of neuron death GO:1902170; biological_process; cellular response to reactive nitrogen species GO:1902911; cellular_component; protein kinase complex GO:1904707; biological_process; positive regulation of vascular smooth muscle cell proliferation GO:1990604; cellular_component; IRE1-TRAF2-ASK1 complex
Type	Genomic
Sequence	HORVU.MOREX.r2.6HG0456610.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)