Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Probe Report: HORVU.MOREX.r2.6HG0452030

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.6HG0452030
Locus	HORVU.MOREX.r2.6HG0452030.1
URL	Gene Ontology GO:0000469 [ Show all 23 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 25 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Mitochondrial transcription termination factor-like GO:0000469; biological_process; cleavage involved in rRNA processing GO:0000470; biological_process; maturation of LSU-rRNA GO:0000784; cellular_component; nuclear chromosome, telomeric region GO:0003723; molecular_function; RNA binding GO:0005515; molecular_function; protein binding GO:0005634; cellular_component; nucleus GO:0005654; cellular_component; nucleoplasm GO:0005697; cellular_component; telomerase holoenzyme complex GO:0005730; cellular_component; nucleolus GO:0005732; cellular_component; small nucleolar ribonucleoprotein complex GO:0006364; biological_process; rRNA processing GO:0006412; biological_process; translation GO:0007004; biological_process; telomere maintenance via telomerase GO:0015030; cellular_component; Cajal body GO:0031118; biological_process; rRNA pseudouridine synthesis GO:0031120; biological_process; snRNA pseudouridine synthesis GO:0031429; cellular_component; box H/ACA snoRNP complex GO:0034513; molecular_function; box H/ACA snoRNA binding GO:0042254; biological_process; ribosome biogenesis GO:0070034; molecular_function; telomerase RNA binding GO:0072589; cellular_component; box H/ACA scaRNP complex GO:0090661; cellular_component; box H/ACA telomerase RNP complex GO:1904874; biological_process; positive regulation of telomerase RNA localization to Cajal body
Type	Genomic
Sequence	HORVU.MOREX.r2.6HG0452030.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)