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GrainGenes Probe Report: HORVU.MOREX.r2.6HG0450600

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.6HG0450600
Locus	HORVU.MOREX.r2.6HG0450600.1
URL	Gene Ontology GO:0001726 [ Show all 30 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 32 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Pathogenesis-related thaumatin superfamily protein GO:0001726; cellular_component; ruffle GO:0003674; molecular_function; molecular_function GO:0004438; molecular_function; phosphatidylinositol-3-phosphatase activity GO:0004721; molecular_function; phosphoprotein phosphatase activity GO:0004725; molecular_function; protein tyrosine phosphatase activity GO:0005575; cellular_component; cellular_component GO:0005737; cellular_component; cytoplasm GO:0005768; cellular_component; endosome GO:0005770; cellular_component; late endosome GO:0005886; cellular_component; plasma membrane GO:0006470; biological_process; protein dephosphorylation GO:0006629; biological_process; lipid metabolic process GO:0008150; biological_process; biological_process GO:0008333; biological_process; endosome to lysosome transport GO:0015031; biological_process; protein transport GO:0016020; cellular_component; membrane GO:0016311; biological_process; dephosphorylation GO:0016787; molecular_function; hydrolase activity GO:0019215; molecular_function; intermediate filament binding GO:0030175; cellular_component; filopodium GO:0035091; molecular_function; phosphatidylinositol binding GO:0035335; biological_process; peptidyl-tyrosine dephosphorylation GO:0042995; cellular_component; cell projection GO:0044088; biological_process; regulation of vacuole organization GO:0045109; biological_process; intermediate filament organization GO:0046716; biological_process; muscle cell cellular homeostasis GO:0046856; biological_process; phosphatidylinositol dephosphorylation GO:0048311; biological_process; mitochondrion distribution GO:0052629; molecular_function; phosphatidylinositol-3, 5-bisphosphate 3-phosphatase activity GO:0070584; biological_process; mitochondrion morphogenesis
Type	Genomic
Sequence	HORVU.MOREX.r2.6HG0450600.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)